Re: [Gusdev-gusdev] Adding features to the sequence

[Jeetendra S. <so...@vb...>]

Steve,

     I'm referring to the last case in the list that Angel mentioned. It
deletes the feature if it is in Db but not in the file. We have a
scenario where new features are predicted and uploaded in different
steps. Thus, while uploading the new features predicted in later
steps, we don't want the features uploaded during previous steps to
be deleted.

  --Jeetendra.



> Jeetendra-
>
> I just talked to Angel who wrote this parser a long time ago.
>
> He says that the parser is supposed to:
>   - match the existing features in the db against the new ones mentioned
> in the gb file
>   - if a feature is in the file but not in the db, it adds the feature
>   - if the feature is in both, it leaves the feature alone
>   - if the feature is in the db but not in the file, it deletes it.
>
> is this not what you are observing?
>
> steve
>
> Jeetendra Soneja wrote:
>
>>Hi all,
>>
>>When we try to upload an existing sequence (and features) using the
>>GBParser, it updates the features of that sequence, i.e. it removes the
>>old and inserts the new ones.
>>
>>However, is there a way to just ADD features (of any type) to the
>> existing
>>sequence in the GUS DB ?
>>
>>Thanks a lot for your help,
>>Jeetendra.
>>
>>
>>
>>
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>


-- 
Jeetendra Soneja
Research Associate
Virginia Bioinformatics Institute
1880 Pratt Dr., Building XV
Blacksburg, VA 24060, USA
Phone: (540)-231-2789
http://www.vbi.vt.edu