[Gusdev-gusdev] Re: [ApiDB] Storing Genbank data in GUS

[Ed R. <ero...@ug...>]

This particular plugin, at least as I understand it, will only
load sequence and gene feature information.  The pipeline we
are discussing will manage a number of other plugins which
will load other kinds of information including GO annotations.

-ed



---- Original message ----
>Date: Tue, 9 Nov 2004 14:05:35 -0500 (EST)
>From: Trish Whetzel <wh...@pc...>  
>Subject: Re: [ApiDB] Storing Genbank data in GUS  
>To: ap...@pc...
>Cc: gus...@li...
>
>I wanted to follow-up on what the plugin is going to load -
sequence
>information only OR will it also load the annotations (GO,
EC) as well.
>The response I heard back from Ed was that the plugin was
only going to
>load the sequence information.  Is that the game plan?
>
>This annotation information is in both the embl and TIGR
files so I was 
>wondering why it would be loaded by two separate plugins.
>
>Trish
>
>
>
>---------- Forwarded message ----------
>Date: Mon, 8 Nov 2004 11:51:49 -0500
>From: Ed Robinson <ero...@ug...>
>To: Trish Whetzel <wh...@pc...>
>Subject: Re: [ApiDB] LoadGeneFeaturesFromXML
>
>The plugin I am writing won't load anything more than sequence
>and gene-feature information.  Other parts of the pipeline we
>are working on will handle go annotations, etc.  Atleast, that
>is how I understand that this is going to work.
>
>-ed
>
>
>
>
>---- Original message ----
>>Date: Mon, 8 Nov 2004 11:37:34 -0500 (EST)
>>From: Trish Whetzel <wh...@pc...>
>>Subject: [ApiDB] LoadGeneFeaturesFromXML
>>To: Ed Robinson <ero...@ug...>
>>Cc: ap...@pc...
>>
>>Hi Ed,
>>
>>Thanks for the docs mapping the TIGR XML file to GUS.  I've
had a quick
>>look through them and it looks like only the sequence
related parts are
>>mentioned.  Was there a decision to NOT include the other
tasks such as
>>GOAnnotation, ECAnnotation?  These are also present in the
embl files and
>>are handled by this plugin.  Will the future version of this
plugin still
>>load this information as well?
>>
>>Trish
>-----------------
>Ed Robinson
>Program Specialist
>Center for Tropical and Emerging Global Diseases
>and Dept. of Genetics
>University of Georgia, Athens, GA 30602
>ero...@ug.../(706) 542.1447
>_______________________________________________
>ApiDB mailing list
>Ap...@pc...
>https://mail.pcbi.upenn.edu/mailman/listinfo/apidb
-----------------
Ed Robinson
Program Specialist
Center for Tropical and Emerging Global Diseases
and Dept. of Genetics
University of Georgia, Athens, GA 30602
ero...@ug.../(706) 542.1447