[Gusdev-gusdev] Re: [ApiDB] Storing Genbank data in GUS

[Trish W. <wh...@pc...>]

I wanted to follow-up on what the plugin is going to load - sequence
information only OR will it also load the annotations (GO, EC) as well.
The response I heard back from Ed was that the plugin was only going to
load the sequence information.  Is that the game plan?

This annotation information is in both the embl and TIGR files so I was 
wondering why it would be loaded by two separate plugins.

Trish



---------- Forwarded message ----------
Date: Mon, 8 Nov 2004 11:51:49 -0500
From: Ed Robinson <ero...@ug...>
To: Trish Whetzel <wh...@pc...>
Subject: Re: [ApiDB] LoadGeneFeaturesFromXML

The plugin I am writing won't load anything more than sequence
and gene-feature information.  Other parts of the pipeline we
are working on will handle go annotations, etc.  Atleast, that
is how I understand that this is going to work.

-ed




---- Original message ----
>Date: Mon, 8 Nov 2004 11:37:34 -0500 (EST)
>From: Trish Whetzel <wh...@pc...>
>Subject: [ApiDB] LoadGeneFeaturesFromXML
>To: Ed Robinson <ero...@ug...>
>Cc: ap...@pc...
>
>Hi Ed,
>
>Thanks for the docs mapping the TIGR XML file to GUS.  I've had a quick
>look through them and it looks like only the sequence related parts are
>mentioned.  Was there a decision to NOT include the other tasks such as
>GOAnnotation, ECAnnotation?  These are also present in the embl files and
>are handled by this plugin.  Will the future version of this plugin still
>load this information as well?
>
>Trish
-----------------
Ed Robinson
Program Specialist
Center for Tropical and Emerging Global Diseases
and Dept. of Genetics
University of Georgia, Athens, GA 30602
ero...@ug.../(706) 542.1447