Re: [Gusdev-gusdev] GBParser problems

[Jinal J. <jjh...@vb...>]

Thanks a lot Sucheta and Jeetendra,

You are right, the gbparser expects a space after the "ORIGIN" 


On Monday 11 October 2004 11:45 am, Jeetendra Soneja wrote:
> Hi Jinal,
>      I had the same problem. After trying several files, I figured out
> that the problem was the trailing spaces after the keyword ORIGIN.
>
>      Try inserting few spaces after ORIGIN. It worked for me atleast. I
> think I had mailed about this problem before, but didn't find any
> better solution.
>
>  --Jeetendra.
>
> > I am trying to load a genbank file and the gbparser keeps giving me this
> > message and finally goes out of memory and dies. Any idea what can be the
> > problem? This genbank file was created by me from our newly sequenced
> > genome
> > and I am pretty sure that there is something missing in the format which
> > the
> > gbparser expects and that's why it dies. I validated my genbank file
> > against
> > "sequin" available from ncbi and everything looks good.
> >
> > Here is the message (the line "VLD     CBIL::Bio::GenBank::Origin      1"
> > goes
> > on and on)
> >
> > VLD     CBIL::Bio::GenBank::Features    1
> > VLD     CBIL::Bio::GenBank::BaseCount   1
> > VLD     CBIL::Bio::GenBank::Origin      1
> > VLD     CBIL::Bio::GenBank::Origin      1
> > VLD     CBIL::Bio::GenBank::Origin      1
> > VLD     CBIL::Bio::GenBank::Origin      1
> > VLD     CBIL::Bio::GenBank::Origin      1
> > VLD     CBIL::Bio::GenBank::Origin      1
> > VLD     CBIL::Bio::GenBank::Origin      1
> > VLD     CBIL::Bio::GenBank::Origin      1
> > VLD     CBIL::Bio::GenBank::Origin      1
> > VLD     CBIL::Bio::GenBank::Origin      1
> > VLD     CBIL::Bio::GenBank::Origin      1
> > VLD     CBIL::Bio::GenBank::Origin      1
> > VLD     CBIL::Bio::GenBank::Origin      1
> > VLD     CBIL::Bio::GenBank::Origin      1
> >
> >
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