Re: Re: [Gusdev-gusdev] GI Number

[Ed R. <ed_...@be...>]

Yeah, it's not in the mapping.  I added it to the view GeneFeature on NaFeatureImp.  I'll make a modification to the mapping in the plugin here.  I'll keep notes on what I've done and once our stuff is in, I'll make the changes known and you can decide if you want to put it in the CVS.

-Ed


> 
> From: "Deborah F. Pinney" <pi...@pc...>
> Date: 2004/09/27 Mon AM 11:08:12 EDT
> To: Ed Robinson <ed_...@be...>
> CC: Jinal Jhaveri <jjh...@vb...>,  gus...@li...
> Subject: Re: Re: [Gusdev-gusdev] GI Number
> 
> locus_tag is not in the list of features in the GBParser. It will have to 
> be added with a table(actually view) destination. Which view is 
> appropriate for this feature? What are the attributes (from the Genbank 
> feature table) for this feature? I'll gladly add this and you can test it 
> or you can add it and test and then commit to cvs.
> 
> It should be added  >line 808, following my %featureNameTableMapping = (
> 
> If the attributes are correct in the mapped table (match the genbank 
> attributes), this should work. If this table is not in the 
> %classChildList, it should also be added to the appropriate line also.
> 
>                                                 -Deborah
> 
> On Mon, 27 Sep 2004, Ed Robinson wrote:
> 
> > So far, down here, I can tell that it is parsing the files for crypto correctly, but I is giving me the following error:
> >
> >
> > ********GEtting loc below6844
> >
> > Mon Sep 27 10:13:09 2004        INVALID QUALIFIER       GUS::Model::DoTS::GeneFeature   ::      locus_tag       ::      cgd7_10
> >
> > Mon Sep 27 10:13:09 2004        INVALID QUALIFIER       GUS::Model::DoTS::Transcript    ::      locus_tag       ::      cgd7_10
> >
> > Do you have any ideas why it is disliking my locus_tags?  I am running this without the commit on, if it is looking for this again in the database.
> >
> > Thanks for all the help on this.  I don't want to change anything that is working, just figure out how to use it.
> >
> > -Ed
> >
> >
> >
> >
> >
> > Ed Robinson
> > 255 Deerfield Rd
> > Bogart, GA 30622
> > (706)425-9181
> > http://www.electedrobinson.com
> >
> > --Learn more about the face of your neighbor, and less about your own.
> >         -Sargent Shriver
> >
> >
> >
> 
> 
> -------------------------------------------------------
> This SF.Net email is sponsored by: YOU BE THE JUDGE. Be one of 170
> Project Admins to receive an Apple iPod Mini FREE for your judgement on
> who ports your project to Linux PPC the best. Sponsored by IBM.
> Deadline: Sept. 24. Go here: http://sf.net/ppc_contest.php
> _______________________________________________
> Gusdev-gusdev mailing list
> Gus...@li...
> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev
> 

Ed Robinson
255 Deerfield Rd
Bogart, GA 30622
(706)425-9181
http://www.electedrobinson.com

--Learn more about the face of your neighbor, and less about your own.
         -Sargent Shriver