Re: Re: [Gusdev-gusdev] GI Number

[Deborah F. P. <pi...@pc...>]

locus_tag is not in the list of features in the GBParser. It will have to 
be added with a table(actually view) destination. Which view is 
appropriate for this feature? What are the attributes (from the Genbank 
feature table) for this feature? I'll gladly add this and you can test it 
or you can add it and test and then commit to cvs.

It should be added  >line 808, following my %featureNameTableMapping = (

If the attributes are correct in the mapped table (match the genbank 
attributes), this should work. If this table is not in the 
%classChildList, it should also be added to the appropriate line also.

                                                -Deborah

On Mon, 27 Sep 2004, Ed Robinson wrote:

> So far, down here, I can tell that it is parsing the files for crypto correctly, but I is giving me the following error:
>
>
> ********GEtting loc below6844
>
> Mon Sep 27 10:13:09 2004        INVALID QUALIFIER       GUS::Model::DoTS::GeneFeature   ::      locus_tag       ::      cgd7_10
>
> Mon Sep 27 10:13:09 2004        INVALID QUALIFIER       GUS::Model::DoTS::Transcript    ::      locus_tag       ::      cgd7_10
>
> Do you have any ideas why it is disliking my locus_tags?  I am running this without the commit on, if it is looking for this again in the database.
>
> Thanks for all the help on this.  I don't want to change anything that is working, just figure out how to use it.
>
> -Ed
>
>
>
>
>
> Ed Robinson
> 255 Deerfield Rd
> Bogart, GA 30622
> (706)425-9181
> http://www.electedrobinson.com
>
> --Learn more about the face of your neighbor, and less about your own.
>         -Sargent Shriver
>
>
>