Re: Re: [Gusdev-gusdev] Plugin for GenBank files

[Ed R. <ed_...@be...>]

Yes, please pass any extra scripts along.  To your recollection, which features does it import?

thanks
-Ed


> 
> From: Jinal Jhaveri <jjh...@vb...>
> Date: 2004/09/24 Fri PM 01:40:12 EDT
> To: ed_...@be...
> Subject: Re: [Gusdev-gusdev] Plugin for GenBank files
> 
> Hi Ed,
> 
> I haven't done development, but I have been using this since a long time. 
> GBparser will work in most cases . I used the word "most cases" because it 
> failes for some newly introduced field in the genbank. Though one thing it 
> doesn't parse is the GI: Number. I have written a small bioperl script as an 
> addendum to gbparser, if you want the GI number too
> 
> 
> --Jinal
> On Friday 24 September 2004 01:29 pm, Ed Robinson wrote:
> > I've found GBParser.pm which seems to do the trick.  It calls on some CBIL
> > packages which parse GenBank files.  Nice, elegant PERL (elegant is not
> > normally a word I associate with PERL).  If anyone out there has done
> > development on these, I'd like to chat a bit to make sure I have a full
> > grasp on these packages before I start trying to parse data.
> >
> > thanks
> > -Ed
> >
> > > From: Ed Robinson <ed_...@be...>
> > > Date: 2004/09/24 Fri PM 01:10:06 EDT
> > > To: <gus...@li...>
> > > Subject: [Gusdev-gusdev] Plugin for GenBank files
> > >
> > > Has anyone written a (partial) plugin for extracting data from GenBank
> > > data?  I have a copy of the annotated Crypto data I pulled via the NCBI
> > > seq viewer and I want to load this data into GUS.  Please let me know if
> > > there is anything ready to use to load any part of this data.
> > >
> > > thanks in advance,
> > > -Ed
> > >
> > >
> > > Ed Robinson
> > > 255 Deerfield Rd
> > > Bogart, GA 30622
> > > (706)425-9181
> > > http://www.electedrobinson.com
> > >
> > > --Learn more about the face of your neighbor, and less about your own.
> > >          -Sargent Shriver
> > >
> > >
> > >
> > >
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> > Ed Robinson
> > 255 Deerfield Rd
> > Bogart, GA 30622
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> >
> > --Learn more about the face of your neighbor, and less about your own.
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> >
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