Re: [Gusdev-gusdev] Homology Data - loading process into GUS

[Pablo N. M. <pa...@pa...>]

Hi Arnaud,
I'm working on orthologous analyses as described in:
http://www.egg.isu.edu/biocourses/bios692/orthomcl

The scripts were provided by Li Li (li...@pc...).

Cheers,
Pablo

On Thu, 2004-08-19 at 07:13, Arnaud Kerhornou wrote: 
> Hi
> 
> I would like to know if there is anything already implemented to process 
> homology data (gene clusters and orthologues data).
> 
> Re. Orthologoues data, we use reciprocal blastp wrapper to generate the 
> orthologous groups, giving a set of cutoff parameters.
> 
> Re. clustering genes within a species into families, we blast a proteome 
> against itself and then run tribe to generate a set of clusters and 
> their members.
> 
> Has anyone worked on processing such data for loading into GUS3 ?
> 
> Thanks
> Arnaud
> 


-- 
-----------------------------
Pablo Nascimento Mendes
CTEGD EMF TIPS Fellow
Kissinger Lab
Department of Genetics
University of Georgia
C210 Life Sciences Bldg.
Athens, Georgia 30602
Phone:706 542-1447
E-mail: pa...@ug...