Re: [Gusdev-gusdev] Questions about LoadBlastSimFast.pm

[Jinal J. <jjh...@vb...>]

The subject_id and query_id are the ones you are talking about
On Friday 06 August 2004 12:51 pm, Jeetendra Soneja wrote:
> Hi,
>
> 1. Does anyone know how do I link the Similarity tables (Dots.similarity
> and Dots.similarityspan) with the ExternalAASequence (or
> ExternalNASequence) table ?
>      Let's assume that we already have the query and subject sequences in
> ExternalAASequence, and the BLAST results in the similarity tables.
> Now, using the similarity tables, I can only get query_table_id and
> subject_table_id, and not the actual sequence_id. However, I want to
> access the actual query and subject sequences. After accessing the
> Similarity.min_query_start and Similarity.max_query_end values, how
> do I access the actual query sequence, since there might be a large
> number of sequences in the table referred by query_table_id?
>
> 2. Since the Similarity.algorithm_id value is not a part of the parsed
> Blast output generated by generateBlastSimilarity.pl, what is the best way
> to incorporate algorithm information in Dots.Similarity ?
>
> Thanks,
> Jeetendra.