Re: [Gusdev-gusdev] BlastAnal.pm and LoadBlastSimFast.pm

[Steve F. <sfi...@pc...>]

i have updated the cbil .tar with the change below.   it is in v1-6-0.

steve

Arnaud Kerhornou wrote:

> Hi
>
> I've got a script from Pablo Mendes called 
> parseBlastFilesForSimilarity.pl that uses CBIL::Bio::Blast::BlastAnal 
> module part of the CBIL distribution. To make the blast parsing work 
> for me (to parse the score), I had to do a minor modification, line 131:
>    if (/... \s(\d+) .../) {
> by
>    if (/... \s+(\d+) .../) {
>
> ie match at least one space before parsing the score value, instead of 
> matching one and only one space.
>
> Also, in the BLAST output, the query and subject ids are meant to be 
> GUS Primary keys, I have instead the real subject and query identifiers.
> In LoadBlastSimFast.pm, could we make the parsing more generic so it 
> can accept both ? I have made the changes locally, I can commit an 
> update if nobody minds.
>
> Shall I make sourceforge entries to log them ?
>
> cheers
> Arnaud
>
>
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