[Gusdev-gusdev] BlastAnal.pm and LoadBlastSimFast.pm

[Arnaud K. <ax...@sa...>]

Hi

I've got a script from Pablo Mendes called 
parseBlastFilesForSimilarity.pl that uses CBIL::Bio::Blast::BlastAnal 
module part of the CBIL distribution. To make the blast parsing work for 
me (to parse the score), I had to do a minor modification, line 131:
    if (/... \s(\d+) .../) {
by
    if (/... \s+(\d+) .../) {

ie match at least one space before parsing the score value, instead of 
matching one and only one space.

Also, in the BLAST output, the query and subject ids are meant to be GUS 
Primary keys, I have instead the real subject and query identifiers.
In LoadBlastSimFast.pm, could we make the parsing more generic so it can 
accept both ? I have made the changes locally, I can commit an update if 
nobody minds.

Shall I make sourceforge entries to log them ?

cheers
Arnaud