Re: [Gusdev-gusdev] Similarity Links

[Arnaud K. <ax...@sa...>]

Hi

Can't we make the plugin LoadBlastSimFast.pm parse directly the Blast 
output, so it doesn't require running generateBlastSimilarity.pl as an 
extra step ?

Arnaud

Jonathan Schug wrote:

> Jeetendra:
>
> 1: Note that the DoTS.Similarity table contains the columns 
> subject_id  and query_id which contain aa_sequence_id or 
> na_sequence_id values.   Since we want to be able to link any two 
> kinds of sequences we can't  make these ordinary foreign keys.
>
> 2: Sounds like an omission to me.  I can't find  
> generateBlastSimilarity.pl, but setting the algorithm_id should be  
> trivial.
>
> Jonathan
>
>
>
>
> ------------------------------------------------------------------------ 
> ---
> Jonathan Schug            Center for Bioinformatics
> js...@pc...     Computational Biology and Informatics Lab
> (215) 573-3113 voice      University of Pennsylvania,
> (215) 573-3111 fax        1413 Blockley Hall, Philadelphia, PA  
> 19014-6021
>
>