[Gusdev-gusdev] Similarity Links

[Jonathan S. <js...@pc...>]

Jeetendra:

1: Note that the DoTS.Similarity table contains the columns subject_id  
and query_id which contain aa_sequence_id or na_sequence_id values.   
Since we want to be able to link any two kinds of sequences we can't  
make these ordinary foreign keys.

2: Sounds like an omission to me.  I can't find  
generateBlastSimilarity.pl, but setting the algorithm_id should be  
trivial.

Jonathan




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Jonathan Schug            Center for Bioinformatics
js...@pc...     Computational Biology and Informatics Lab
(215) 573-3113 voice      University of Pennsylvania,
(215) 573-3111 fax        1413 Blockley Hall, Philadelphia, PA  
19014-6021