Re: [Gusdev-gusdev] SequenceType - UpdateGusFromXML

[Paul M. <pj...@sa...>]

I've changed the docs so the line breaks are no longer present.
Thanks for letting us know.

On 24 Jul 2004, at 21:07, Pablo N. Mendes wrote:

> Hello all,
> this is just to let you know that the plug-in UpdateGusFromXML is
> crashing when trying to load DoTS::SequenceType bootstrap data  
> published
> on Wiki.
>
> The error message has:
>
> Illegal className 'description' (not in schema::table form) at
> /usr/local/gus/gus_home/lib/perl/GUS/ObjRelP/DbiDatabase.pm line 696
>
> GUS::ObjRelP::DbiDatabase::getFullTableClassName('GUS::ObjRelP:: 
> DbiDatabase=HASH(0x8841c70)','description') called at  
> /usr/local/gus/gus_home/lib/perl/GUS/ObjRelP/DbiDatabase.pm line 261
> (...)
>
> I found that if I eliminate the line brake from this part of the XML:
>   <description>\n
>     mRNA sequence predicted by an algorithm from genomic DNA\n
>   </description>\n
>
> And input to the plugin like this:
>
>   <description>mRNA sequence predicted by an algorithm from genomic
> DNA</description>\n
>
> everything goes well. The plugin seems to be reading a "tag + line
> brake" (e.g. "<description>\n") as a "new class", instead of new
> attribute of the current class.
>
> Best regards,
> Pablo
> -- 
> -----------------------------
> Pablo N. Mendes
> Research Scholar
> Department of Molecular Biology (DBBM)
> Fiocruz
> Rio de Janeiro, RJ
>
>
>
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