[Gusdev-gusdev] SequenceType - UpdateGusFromXML

[Pablo N. M. <pa...@pa...>]

Hello all,
this is just to let you know that the plug-in UpdateGusFromXML is
crashing when trying to load DoTS::SequenceType bootstrap data published
on Wiki.

The error message has:

Illegal className 'description' (not in schema::table form) at
/usr/local/gus/gus_home/lib/perl/GUS/ObjRelP/DbiDatabase.pm line 696
       
GUS::ObjRelP::DbiDatabase::getFullTableClassName('GUS::ObjRelP::DbiDatabase=HASH(0x8841c70)','description') called at /usr/local/gus/gus_home/lib/perl/GUS/ObjRelP/DbiDatabase.pm line 261
(...)

I found that if I eliminate the line brake from this part of the XML:
  <description>\n
    mRNA sequence predicted by an algorithm from genomic DNA\n
  </description>\n

And input to the plugin like this:

  <description>mRNA sequence predicted by an algorithm from genomic
DNA</description>\n

everything goes well. The plugin seems to be reading a "tag + line
brake" (e.g. "<description>\n") as a "new class", instead of new
attribute of the current class.

Best regards,
Pablo
-- 
-----------------------------
Pablo N. Mendes
Research Scholar
Department of Molecular Biology (DBBM)
Fiocruz
Rio de Janeiro, RJ