Re: [Gusdev-gusdev] GBParser keyword and repeat feature

[Deborah F. P. <pi...@pc...>]

On Tue, 20 Jul 2004, Sucheta Tripathy wrote:

> Hi,
>
> The Keyword features were commented in the earlier versions of GBParser. I 
> did not see any change in that area in the newer versions. Has anyone already 
> worked on it?

I don't think anyone here has done anything with keywords.



>
> Also has anyone got the repeat features populated using GBParser. In my case 
> the repeat features get partially populated. For example I don't get relevant 
> information in repeats.map, repeats.repeat_type, repeats.repeat_unit etc. The 
> repeat view does not have place for storing the repeat regions like beginning 
> at say 6790 and ending at 6800 and also the repeat sequences are not stored.

repeats.map, repeats.rpt_type, and repeat.rpt_unit are filled with the 
GBParser plugin in our hands. Are you testing with records that have the 
data used?

The location information is stored in dots.nalocation which has a foreign 
key to repeats (na_feature_id).


                                                            Debbie







>
> Any thoughts ??
>
>
> Sucheta
>
>
>
>
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