Re: [Gusdev-gusdev] Go annotation upload

[Dave B. <db...@pc...>]

Yes if you do a cvs update in the GUS/GOPredict component, you should be 
able to rebuild.  That would probably be the easiest way.

I believe you will also need the latest release of the CBIL project. 
Download "CBIL_v1-5-0.tar.gz" from

http://www.cbil.upenn.edu/downloads/CBIL/releases/

and replace your existing CBIL directory in {PROJECT_HOME} with the 1.5 
version (assuming you haven't updated that recently).

Dave


On Thu, 15 Jul 2004, Thomas Otto wrote:

> Hi Dave,
>
> when I do not have this plugin in my GUS directory, can I download it over 
> the cvs and then rebuild the stuff, or can you just send it to me? I think 
> there are some modules missing in my build, done last december...
>
> Thanks,
> Thomas
>
> Dave Barkan wrote:
>
>> Whoops, that last message was a mistake on my part, I read the email too 
>> fast.
>> 
>> Try GUS::GOPredict::Plugin::LoadGoAssociation.  This is pretty well 
>> documented as well.  In addition to loading the annotations (in the 
>> DoTS.GOAssociation table) loads data into some other tables that we use 
>> for our CBIL GO Predictor, but you might not need (mostly the table 
>> DoTS.GOAssociationInstance).  Give it a whirl and let me know how it goes.
>> 
>> Dave
>> 
>> On Thu, 15 Jul 2004, Thomas Otto wrote:
>> 
>>> Hello -,
>>> 
>>> with witch plugin can I upload the Goannotations from the 
>>> http://www.geneontology.org/GO.current.annotations.shtml page?
>>> 
>>> Thanks in advance,
>>> 
>>> Thomas
>>> 
>>> 
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