Re: [Gusdev-gusdev] LoadBlastSimFast.pm

[Dave B. <db...@pc...>]

Hi Pablo,

We were seeing errors like this a couple days ago and made our own 
changes.  I have a feeling your Oracle.pm module might not be up-to-date 
with regards to the CVS repository because one thing we did was rename the 
nextValVar method in Oracle.pm!  I would recommend the following steps 
(all surface-level changes but will make things easier for you in the 
future):

1. cvs update Oracle.pm

2. change line 435 in LoadBlastSimFast so the method name is "nextVal", 
not "nextValVar".

I will change it similarly and commit to CVS (so I guess alternatively you 
could just cvs update LoadBlastSimFast when I'm done, although I think you 
would have to resolve conflicts.)

Your message is definitely standard procedure; thanks for bringing it to 
our attention!

Dave

  On Tue, 13 Jul 2004, Pablo Nascimento Mendes wrote:

> Hello dev folks,
> I was getting errors when running the LoadBlastSimFast plug-in. It seems
> to be due to an update in the Oracle.pm.
>
> Error msg:
> Can't locate object method "nextValSql" via package
> "GUS::ObjRelP::Oracle" (perhaps you forgot to load
> "GUS::ObjRelP::Oracle"?) at
> /var/local/gus_home/lib/perl/GUS/Common/Plugin/LoadBlastSimFast.pm line
> 435, <GEN0> line 1654.
>
> I found this line in the LoadBlastSimFast.pm
> 433:  my $nextvalSql =
> $db->getDbPlatform()->nextValSql("dots.SimilaritySpan");
>
> Then I changed to:
> my $nextvalSql =
> $db->getDbPlatform()->nextValVar("dots.SimilaritySpan");
>
> Now it's working fine.
>
> I don't know what is the standard procedure, but I'm reporting the error
> so somebody with "The Power" :) who can fix and commit the changes to
> the CVS.
>
> Please let me know if there is a better way to proceed in cases like
> this.
>
> Best regards,
> Pablo
> --
> -----------------------------
> Pablo Nascimento Mendes
> Research Scholar
> Kissinger Lab
> Department of Genetics
> University of Georgia
> C210 Life Sciences Bldg.
> Athens, Georgia 30602
> Phone:706 542-1447
> E-mail: pa...@ug...
>
>
>
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