Re: [Gusdev-gusdev] Location of gene prediction program

[Steve F. <sfi...@pc...>]

sucheta-

can you clarify where the prediction_program_algorithm is used in your 
data.  Is it in a genbank file?  can you provide a snippet of that data?

thanks,
steve

Sucheta Tripathy wrote:

> Hi,
>
> My most immediate concern is about locating where the 
> prediction_program_algorithm is stored in GUS. Here I mean the gene 
> prediction programs like genscan, glimmer etc.
>
> In some of the views which gets data from NAFeatureIMP though I see 
> prediction_algorithm_id but that refers to core.algorithm, and which 
> just stores the plugin information, that are used in the current project.
> For example in our core.algorithm table the following is the data:
> id                                                         Name
> ===                                                     =====
> 1                                                        SQL*PLUS
> 2                                                        GA-Plugin
> 3 GUS::Common::Plugin::SubmitRow
> 4 GUS::Common::Plugin::LoadTaxon
> 5 GUS::GOPredict::Plugin::LoadGoOntology
> ....
> So the prediction_algorithm_id is wrongly pointing to core.algorithm??
>
>
> thanks
> Sucheta
>
>
>
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