Re: [Gusdev-gusdev] Location of gene prediction program

[Jinal J. <jjh...@vb...>]

Core.Algorithm is the table where we (or the plugin) make an entry of the 
algorithm used. All the algorithm ids point to this table. Thus this table is 
not limited to plugin entries only. 

--Jinal


p.s Though Theoritically I assume that whatever we will be doing with GUS 
should ideally be with a plugin written by us according to the format 
described on the wiki and the website.




On Thursday 01 July 2004 12:15 pm, Sucheta Tripathy wrote:
> Hi,
>
> My most immediate concern is about locating where the
> prediction_program_algorithm is stored in GUS. Here I mean the gene
> prediction programs like genscan, glimmer etc.
>
> In some of the views which gets data from NAFeatureIMP though I see
> prediction_algorithm_id but that refers to core.algorithm, and which just
> stores the plugin information, that are used in the current project.
> For example in our core.algorithm table the following is the data:
> id                                                         Name
> ===                                                     =====
> 1                                                        SQL*PLUS
> 2                                                        GA-Plugin
> 3
> GUS::Common::Plugin::SubmitRow
> 4
> GUS::Common::Plugin::LoadTaxon
> 5
> GUS::GOPredict::Plugin::LoadGoOntology
> ....
> So the prediction_algorithm_id is wrongly pointing to core.algorithm??
>
>
> thanks
> Sucheta
>
>
>
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