[Gusdev-gusdev] Problem installing new instance of GUS

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Hi
I am trying to install a new instance of GUS on a different UNIX machine 
and I am getting following error while building,  I hadn't got this error 
while installing previous instance of GUS,

while running build command for first time, after making reqd setings, I 
get following error:

**********************************************************************

[smadhura@asiago GUS]$ build GUS install -append

ant -f /home/smadhura/Projects/install/build.xml install -Dproj=GUS -
DtargetDir=/home/smadhura/GUS -Dcomp= -
DprojectsDir=/home/smadhura/Projects   -Dappend=true   -logger 
org.apache.tools.ant.NoBannerLogger | grep ']'

     [echo] .
     [echo] Installing CBIL/Bio
     [echo] .
     [echo] Installing CBIL/CSP
    [javac] Compiling 26 source files 
to /home/smadhura/Projects/CBIL/CSP/classes

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/HTMLUtil.jav
a:1873: package com.oroinc.text.perl does not exist
    [javac]     protected final static com.oroinc.text.perl.Perl5Util util 
=
    [javac]                                                ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Actio
n.java:14: package com.oroinc.text.perl does not exist
    [javac] import com.oroinc.text.perl.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Item.
java:13: package javax.servlet.http does not exist
    [javac] import javax.servlet.http.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Actio
n.java:111: cannot resolve symbol
    [javac] symbol  : class Perl5Util
    [javac] location: class edu.cbil.csp.dialog.Action
    [javac]     protected static Perl5Util perl = new Perl5Util();
    [javac]                      ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Item.
java:181: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.Item
    [javac]     public void storeHTMLServletInput(HttpServletRequest rq) {}
    [javac]                                       ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Item.
java:197: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.Item
    [javac]     public boolean validateHTMLServletInput(HttpServletRequest 
rq, StringBuffer errors,
    [javac]                                             ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Actio
nItemGroup.java:13: package javax.servlet.http does not exist
    [javac] import javax.servlet.http.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/ItemG
roup.java:13: package javax.servlet.http does not exist
    [javac] import javax.servlet.http.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/ItemG
roup.java:15: package com.oroinc.text.perl does not exist
    [javac] import com.oroinc.text.perl.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/ItemG
roup.java:88: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.ItemGroup
    [javac]     public void storeHTMLServletInput(HttpServletRequest rq) {
    [javac]                                       ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/ItemG
roup.java:97: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.ItemGroup
    [javac]     public boolean validateHTMLServletInput(HttpServletRequest 
rq, StringBuffer errors,
    [javac]                                             ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/ItemG
roup.java:327: cannot resolve symbol
    [javac] symbol  : class Perl5Util
    [javac] location: class edu.cbil.csp.dialog.ItemGroup
    [javac]     protected static Perl5Util perl = new Perl5Util();
    [javac]                      ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/BoolP
aram.java:13: package javax.servlet.http does not exist
    [javac] import javax.servlet.http.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Param
.java:13: package javax.servlet.http does not exist
    [javac] import javax.servlet.http.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/BoolP
aram.java:89: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.BoolParam
    [javac]     public void storeHTMLServletInput(HttpServletRequest rq) {
    [javac]                                       ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/BoolP
aram.java:94: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.BoolParam
    [javac]     public boolean validateHTMLServletInput(HttpServletRequest 
rq, StringBuffer errors,
    [javac]                                             ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Param
.java:203: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.Param
    [javac]     public void storeHTMLServletInput(HttpServletRequest rq) {
    [javac]                                       ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Param
.java:208: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.Param
    [javac]     public boolean validateHTMLServletInput(HttpServletRequest 
rq, StringBuffer errors,
    [javac]                                             ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Const
antParam.java:12: package javax.servlet.http does not exist
    [javac] import javax.servlet.http.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Const
antParam.java:81: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.ConstantParam
    [javac]     public void storeHTMLServletInput(HttpServletRequest rq) {}
    [javac]                                       ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Doubl
eParam.java:13: package javax.servlet.http does not exist
    [javac] import javax.servlet.http.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Doubl
eParam.java:126: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.DoubleParam
    [javac]     public boolean validateHTMLServletInput(HttpServletRequest 
rq, StringBuffer errors,
    [javac]                                             ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/EnumP
aram.java:14: package javax.servlet.http does not exist
    [javac] import javax.servlet.http.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/EnumP
aram.java:179: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.EnumParam
    [javac]     public boolean validateHTMLServletInput(HttpServletRequest 
rq, StringBuffer errors,
    [javac]                                             ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/FreeT
extParam.java:13: package javax.servlet.http does not exist
    [javac] import javax.servlet.http.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/FreeT
extParam.java:111: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.FreeTextParam
    [javac]   public boolean validateHTMLServletInput(HttpServletRequest 
rq, StringBuffer errors,
    [javac]                                           ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/IntPa
ram.java:13: package javax.servlet.http does not exist
    [javac] import javax.servlet.http.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/IntPa
ram.java:123: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.IntParam
    [javac]     public boolean validateHTMLServletInput(HttpServletRequest 
rq, StringBuffer errors,
    [javac]                                             ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Multi
Param.java:14: package javax.servlet.http does not exist
    [javac] import javax.servlet.http.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Multi
Param.java:113: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.MultiParam
    [javac]     public void storeHTMLServletInput(HttpServletRequest rq) {
    [javac]                                       ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Multi
Param.java:118: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.MultiParam
    [javac]     public boolean validateHTMLServletInput(HttpServletRequest 
rq, StringBuffer errors,
    [javac]                                             ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Passw
ordParam.java:12: package javax.servlet.http does not exist
    [javac] import javax.servlet.http.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Strin
gEnumParam.java:14: package javax.servlet.http does not exist
    [javac] import javax.servlet.http.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Strin
gEnumParam.java:180: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.StringEnumParam
    [javac]     public boolean validateHTMLServletInput(HttpServletRequest 
rq, StringBuffer errors,
    [javac]                                             ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/TreeE
numParam.java:13: package javax.servlet.http does not exist
    [javac] import javax.servlet.http.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/TreeE
numParam.java:15: package com.oroinc.text.perl does not exist
    [javac] import com.oroinc.text.perl.*;
    [javac] ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/TreeE
numParam.java:79: cannot resolve symbol
    [javac] symbol  : class HttpServletRequest
    [javac] location: class edu.cbil.csp.dialog.TreeEnumParam
    [javac]     public boolean validateHTMLServletInput(HttpServletRequest 
rq, StringBuffer errors,
    [javac]                                             ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/HTMLUtil.jav
a:1874: package com.oroinc.text.perl does not exist
    [javac]     new com.oroinc.text.perl.Perl5Util();
    [javac]                                 ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Actio
n.java:111: cannot resolve symbol
    [javac] symbol  : class Perl5Util
    [javac] location: class edu.cbil.csp.dialog.Action
    [javac]     protected static Perl5Util perl = new Perl5Util();
    [javac]                                           ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/ItemG
roup.java:327: cannot resolve symbol
    [javac] symbol  : class Perl5Util
    [javac] location: class edu.cbil.csp.dialog.ItemGroup
    [javac]     protected static Perl5Util perl = new Perl5Util();
    [javac]                                           ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/TreeE
numParam.java:131: cannot resolve symbol
    [javac] symbol  : class Perl5Util
    [javac] location: class edu.cbil.csp.dialog.TreeEnumParam
    [javac]     Perl5Util p5 = new Perl5Util();
    [javac]         ^

[javac] /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/TreeE
numParam.java:131: cannot resolve symbol
    [javac] symbol  : class Perl5Util
    [javac] location: class edu.cbil.csp.dialog.TreeEnumParam
    [javac]     Perl5Util p5 = new Perl5Util();
    [javac]                            ^
    [javac] 
Note: /home/smadhura/Projects/CBIL/CSP/src/java/edu/cbil/csp/dialog/Action.
java uses or overrides a deprecated API.
    [javac] Note: Recompile with -deprecation for details.
    [javac] 42 errors

BUILD FAILED
/home/smadhura/Projects/install/build.xml:26: Following error occured 
while executing this line
/home/smadhura/Projects/GUS/build.xml:8: Following error occured while 
executing this line
/home/smadhura/Projects/CBIL/build.xml:46: Following error occured while 
executing this line
/home/smadhura/Projects/install/build.xml:216: Following error occured 
while executing this line
/home/smadhura/Projects/install/build.xml:235: Compile failed; see the 
compiler
error output for details.

Total time: 12 seconds
**********************************************************************

I downloaded PerlTools.jar and have included it in my classpath but that 
still doesnot help

Could smeone clarfy why am I getting this error?

Thanks!

Madhura