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Re: [Gusdev-gusdev] "RE-GENERATE THE GUS OBJECTS"
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From: Michael L. <lu...@ug...> - 2004-06-10 19:50:10
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Dave-
That seemed to do it. I had to create the core.workflonode view, and
core.workflownodeimp, then insert them into tableinfo.
So I have successfully done a
build GUS install -append
without any crashes.
Still can't run the ga though. Steve said he was working on it. I
don't think that there is anything that happens with the following
command that alters the database, so I don't see how it would have reset
the SEQ.
Thanks,
Michael Luchtan
On Thu, 2004-06-10 at 15:22, Dave Barkan wrote:
> I may have seen something similar to this a few months ago. Make sure
> that the table "Core.WorkflowNode" is in your schema and in your
> TableInfo (and Core.WorkflowNodeImp for that matter).
>
> Dave
>
> On Thu, 10 Jun 2004, Michael Luchtan wrote:
>
> > Steve-
> > Not all of them, just three:
> > [root@mkiwi install]# cd ../GUS/Model/src/java/org/gusdb/model/Core/
> > [root@mkiwi Core]# ls WorkflowN*
> > WorkflowNoOpNode.java WorkflowNoOpNode_Row.java
> > WorkflowNoOpNode_Table.java
> >
> > Why is this? I guess that is why it is complaining about not finding
> > the workflownode object. But these objects should be dynamically
> > created, no? Am I missing something in my core.tableinfo or something?
> >
> > Thanks for the quick reply. I appreciate it.
> > Michael Luchtan
> >
> >
> >
> >
> >
> > On Thu, 2004-06-10 at 15:09, Steve Fischer wrote:
> > > about WorkflowNode: is the file in the following dir?
> > >
> > > [sfischer@pythia Core]$cd
> > > $PROJECT_HOME/GUS/Model/src/java/org/gusdb/model/Core/
> > > [sfischer@pythia Core]$ ls WorkflowN*
> > > WorkflowNode.java WorkflowNode_Table.java WorkflowNoOpNode_Row.java
> > > WorkflowNode_Row.java WorkflowNoOpNode.java WorkflowNoOpNode_Table.java
> > >
> > > about ga, i have reproduced the problem here, and will let you know as
> > > soon as i have fixed it. it is probably a result of the new postgres
> > > compatibility code.
> > >
> > > steve
> > >
> > > Michael Luchtan wrote:
> > >
> > > >So here is the current situation. I have the newest GUS, install, and
> > > >CBIL available. When I attempt to build GUS by executing the following
> > > >command:
> > > >build GUS install -append
> > > >Everything seems to go fine until we get the following error message:
> > > > [exec] generating java object for DoTS::TranslatedAASequence
> > > > [exec] generating java object for RAD3::SpotFamily
> > > > [mkdir] Created dir:
> > > >/var/local/checkout/GUS/Model/src/java/org/gusdb/model/hand_edited/App
> > > > [copy] Copying 2 files to
> > > >/var/local/checkout/GUS/Model/src/java/org/gusdb/model/DoTS
> > > > [copy] Copying 1 file to
> > > >/var/local/checkout/GUS/Model/src/java/org/gusdb/model/SRes
> > > > [echo] Starting target: JavaModel
> > > > [echo] .
> > > > [echo] Installing GUS/Model
> > > > [copy] Copying 1291 files to /var/local/gus_home/lib/perl/GUS/Model
> > > > [mkdir] Created dir: /var/local/checkout/GUS/Model/classes
> > > > [javac] Compiling 1086 source files to
> > > >/var/local/checkout/GUS/Model/classes
> > > > [javac]
> > > >/var/local/checkout/GUS/Model/src/java/org/gusdb/model/Core/WorkflowEdge_Row.java:119: cannot resolve symbol
> > > > [javac] symbol : class WorkflowNode
> > > > [javac] location: package Core
> > > > [javac] public void
> > > >setToWorkflowNode(org.gusdb.model.Core.WorkflowNode
> > > >to_workflow_node_id){
> > > > [javac] ^
> > > > [javac]
> > > >/var/local/checkout/GUS/Model/src/java/org/gusdb/model/Core/WorkflowEdge_Row.java:123: cannot resolve symbol
> > > > [javac] symbol : class WorkflowNode
> > > > [javac] location: package Core
> > > > [javac] public org.gusdb.model.Core.WorkflowNode
> > > >getToWorkflowNode(boolean retrieveFromDb)
> > > > [javac] ^
> > > > [javac]
> > > >/var/local/checkout/GUS/Model/src/java/org/gusdb/model/Core/WorkflowEdge_Row.java:129: cannot resolve symbol
> > > > [javac] symbol : class WorkflowNode
> > > > [javac] location: package Core
> > > > [javac] public void
> > > >setFromWorkflowNode(org.gusdb.model.Core.WorkflowNode
> > > >from_workflow_node_id){
> > > > [javac] ^
> > > > [javac]
> > > >/var/local/checkout/GUS/Model/src/java/org/gusdb/model/Core/WorkflowEdge_Row.java:133: cannot resolve symbol
> > > > [javac] symbol : class WorkflowNode
> > > > [javac] location: package Core
> > > > [javac] public org.gusdb.model.Core.WorkflowNode
> > > >getFromWorkflowNode(boolean retrieveFromDb)
> > > > [javac] ^
> > > > [javac]
> > > >/var/local/checkout/GUS/Model/src/java/org/gusdb/model/Core/Workflow_Row.java:175: cannot resolve symbol
> > > > [javac] symbol : class WorkflowNode
> > > > [javac] location: package Core
> > > > [javac] public void
> > > >addWorkflowNode(org.gusdb.model.Core.WorkflowNode workflownode){
> > > > [javac] ^
> > > > [javac]
> > > >/var/local/checkout/GUS/Model/src/java/org/gusdb/model/Core/GroupInfo_Row.java:3136: cannot resolve symbol
> > > > [javac] symbol : class WorkflowNode
> > > > [javac] location: package Core
> > > > [javac] public void
> > > >addWorkflowNode(org.gusdb.model.Core.WorkflowNode workflownode){
> > > > [javac] ^
> > > > [javac]
> > > >/var/local/checkout/GUS/Model/src/java/org/gusdb/model/Core/ProjectInfo_Row.java:2740: cannot resolve symbol
> > > > [javac] symbol : class WorkflowNode
> > > > [javac] location: package Core
> > > > [javac] public void
> > > >addWorkflowNode(org.gusdb.model.Core.WorkflowNode workflownode){
> > > > [javac] ^
> > > > [javac]
> > > >/var/local/checkout/GUS/Model/src/java/org/gusdb/model/Core/AlgorithmInvocation_Row.java:2306: cannot resolve symbol
> > > > [javac] symbol : class WorkflowNode
> > > > [javac] location: package Core
> > > > [javac] public void
> > > >addWorkflowNode_IAmA_algorithminvocation(org.gusdb.model.Core.WorkflowNode workflownode_iama_algorithminvocation){
> > > >
> > > >[javac] ^
> > > > [javac]
> > > >/var/local/checkout/GUS/Model/src/java/org/gusdb/model/Core/AlgorithmInvocation_Row.java:2702: cannot resolve symbol
> > > > [javac] symbol : class WorkflowNode
> > > > [javac] location: package Core
> > > > [javac] public void
> > > >addWorkflowNode_IAmA_rowalginvocation(org.gusdb.model.Core.WorkflowNode
> > > >workflownode_iama_rowalginvocation){
> > > >
> > > >[javac] ^
> > > > [javac]
> > > >/var/local/checkout/GUS/Model/src/java/org/gusdb/model/Core/UserInfo_Row.java:1847: cannot resolve symbol
> > > > [javac] symbol : class WorkflowNode
> > > > [javac] location: package Core
> > > > [javac] public void
> > > >addWorkflowNode(org.gusdb.model.Core.WorkflowNode workflownode){
> > > > [javac] ^
> > > > [javac]
> > > >/var/local/checkout/GUS/Model/src/java/org/gusdb/model/Core/WorkflowEdge_Row.java:126: cannot resolve symbol
> > > > [javac] symbol : class WorkflowNode
> > > > [javac] location: package Core
> > > > [javac] return
> > > >(org.gusdb.model.Core.WorkflowNode)getParent("to_workflow_node_id",
> > > >retrieveFromDb);
> > > > [javac] ^
> > > > [javac]
> > > >/var/local/checkout/GUS/Model/src/java/org/gusdb/model/Core/WorkflowEdge_Row.java:136: cannot resolve symbol
> > > > [javac] symbol : class WorkflowNode
> > > > [javac] location: package Core
> > > > [javac] return
> > > >(org.gusdb.model.Core.WorkflowNode)getParent("from_workflow_node_id",
> > > >retrieveFromDb);
> > > > [javac] ^
> > > > [javac] 12 errors
> > > >
> > > >BUILD FAILED
> > > >file:/var/local/checkout/install/build.xml:235: Compile failed; see the
> > > >compiler error output for details.
> > > >
> > > >Total time: 14 minutes 11 seconds
> > > >
> > > >
> > > >
> > > >Who knows why this isn't working, but I think I know why ga and such is
> > > >no longer working. When I attempt to run anything with ga, I get PK
> > > >violations. I am under the impressions that ga (or perhaps somewhere
> > > >else) has an internal counter to deal with things like primary keys like
> > > >algorithm_implementation_id or algorithm_invocation_id when inserting
> > > >new entries.
> > > >Here is the error I get when trying to update ga for the new SubmitRow
> > > >plugin:
> > > >
> > > >[root@mkiwi install]# ga +update GUS::Common::Plugin::SubmitRow
> > > >DBD::Oracle::st execute failed: ORA-00001: unique constraint
> > > >(CORE.PK_ALGORITHMIMPLEMENTATION) violated (DBD ERROR: OCIStmtExecute)
> > > >at /var/local/gus_home/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 145.
> > > >
> > > > SQL ERROR!! involving
> > > >
> > > > INSERT INTO Core.AlgorithmImplementation ( description,
> > > >row_user_id, user_write, group_write, executable_md5,
> > > >algorithm_implementation_id, row_project_id, cvs_revision, group_read,
> > > >row_group_id, cvs_tag, executable, other_read, modification_date,
> > > >user_read, algorithm_id, row_alg_invocation_id, other_write )
> > > > VALUES ( ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, SYSDATE, ?, ?, ?,
> > > >? )
> > > > Values: make consistent with GUS 3.0, 4, 1, 1,
> > > >2e3da77408e21e4e9d7b57ec9b8d412d, 24, 2, 1.8, 1, 2, ,
> > > >GUS::Common::Plugin::SubmitRow, 1, 1, 3, 1, 0 at
> > > >/var/local/gus_home/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 185
> > > >
> > > >GUS::ObjRelP::DbiDbHandle::death('GUS::ObjRelP::DbiDbHandle=HASH(0x85f2b00)', '^J SQL ERROR!! involving^J ^J INSERT INTO Core.AlgorithmImplemen...') called at /var/local/gus_home/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 148
> > > >
> > > >GUS::ObjRelP::DbiDbHandle::sqlExec('GUS::ObjRelP::DbiDbHandle=HASH(0x85f2b00)', 'GUS::ObjRelP::DbiDbHandle::st=HASH(0x8773514)', 'ARRAY(0x877355c)', '^J INSERT INTO Core.AlgorithmImplementation ( description, ro...') called at /var/local/gus_home/lib/perl/GUS/ObjRelP/DbiRow.pm line 681
> > > >
> > > >GUS::ObjRelP::DbiRow::quote_and_insert('GUS::Model::Core::AlgorithmImplementation=HASH(0x8713d68)', 'HASH(0x81ef630)') called at /var/local/gus_home/lib/perl/GUS/ObjRelP/DbiRow.pm line 628
> > > >
> > > >GUS::ObjRelP::DbiRow::insert('GUS::Model::Core::AlgorithmImplementation=HASH(0x8713d68)') called at /var/local/gus_home/lib/perl/GUS/Model/GusRow.pm line 1677
> > > >
> > > >GUS::Model::GusRow::submit('GUS::Model::Core::AlgorithmImplementation=HASH(0x8713d68)', undef, 1) called at /var/local/gus_home/lib/perl/GUS/Model/GusRow.pm line 1764
> > > >
> > > >GUS::Model::GusRow::submitChildrenInClass('GUS::Model::Core::Algorithm=HASH(0x86f83e8)', 'GUS::Model::Core::AlgorithmImplementation') called at /var/local/gus_home/lib/perl/GUS/Model/GusRow.pm line 1745
> > > >
> > > >GUS::Model::GusRow::submitAllChildren('GUS::Model::Core::Algorithm=HASH(0x86f83e8)') called at /var/local/gus_home/lib/perl/GUS/Model/GusRow.pm line 1684
> > > >
> > > >GUS::Model::GusRow::submit('GUS::Model::Core::Algorithm=HASH(0x86f83e8)') called at /var/local/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 812
> > > >
> > > >GUS::PluginMgr::GusApplication::create_or_update_implementation('GUS::PluginMgr::GusApplication=HASH(0x80fbb4c)', 1, 'GUS::Common::Plugin::SubmitRow') called at /var/local/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 466
> > > >
> > > >GUS::PluginMgr::GusApplication::doMajorMode_Update('GUS::PluginMgr::GusApplication=HASH(0x80fbb4c)', 'GUS::Common::Plugin::SubmitRow') called at /var/local/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 283
> > > >
> > > >GUS::PluginMgr::GusApplication::doMajorMode('GUS::PluginMgr::GusApplication=HASH(0x80fbb4c)', 'GUS::Common::Plugin::SubmitRow') called at /var/local/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 192
> > > >
> > > >GUS::PluginMgr::GusApplication::parseAndRun('GUS::PluginMgr::GusApplication=HASH(0x80fbb4c)', 'ARRAY(0x8102dbc)') called at /var/local/gus_home/bin/ga line 11
> > > >[root@mkiwi install]#
> > > >
> > > >
> > > >How can I get these counters reset? Or is this the wrong direction for
> > > >finding a solution to the problem?
> > > >
> > > >Thanks,
> > > >Michael Luchtan
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >On Wed, 2004-06-09 at 17:00, Steve Fischer wrote:
> > > >
> > > >
> > > >>michael-
> > > >>
> > > >>it looks like you added a row to TableInfo for the
> > > >>SResVer::MassSpecSummary. if so, delete it and build again.
> > > >>
> > > >>steve
> > > >>
> > > >>Michael Luchtan wrote:
> > > >>
> > > >>
> > > >>
> > > >>>It has been a long time since a build took place here, and I was not
> > > >>>really present for the installation of GUS. But in the checkouts
> > > >>>directory I checked out GUS from Sanger. I executed the
> > > >>>build GUS install -append
> > > >>>and got the following errors:
> > > >>> [exec] generating java object for SResVer::MassSpecSummary
> > > >>> [exec] Error: Package Table Name '' is not in the form of
> > > >>>org.gusdb.model.SCHEMA.NAME at /var/lo\
> > > >>>cal/gus_home/lib/perl/GUS/ObjRelP/Generator/RowGenerator.pm line 91
> > > >>> [exec]
> > > >>>GUS::ObjRelP::Generator::RowGenerator::_cutPackageTableName('GUS::ObjRelP::Generator::\
> > > >>>JavaRowGenerator=HASH(0x83955d0)', undef) called at
> > > >>>/var/local/gus_home/lib/perl/GUS/ObjRelP/Generator\
> > > >>>/JavaRowGenerator.pm line 410
> > > >>> [exec]
> > > >>>GUS::ObjRelP::Generator::JavaRowGenerator::_createParentAccessors('GUS::ObjRelP::Gener\
> > > >>>ator::JavaRowGenerator=HASH(0x83955d0)', 'HASH(0x85d48ec)') called at
> > > >>>/var/local/gus_home/lib/perl/GUS\
> > > >>>/ObjRelP/Generator/JavaRowGenerator.pm line 127
> > > >>> [exec]
> > > >>>GUS::ObjRelP::Generator::JavaRowGenerator::_genAccessors('GUS::ObjRelP::Generator::Jav\
> > > >>>aRowGenerator=HASH(0x83955d0)') called at
> > > >>>/var/local/gus_home/lib/perl/GUS/ObjRelP/Generator/JavaRowGe\
> > > >>>nerator.pm line 32
> > > >>> [exec]
> > > >>>GUS::ObjRelP::Generator::JavaRowGenerator::generate('GUS::ObjRelP::Generator::JavaRowG\
> > > >>>enerator=HASH(0x83955d0)', undef) called at
> > > >>>/var/local/gus_home/lib/perl/GUS/ObjRelP/Generator/Generat\
> > > >>>or.pm line 109
> > > >>> [exec]
> > > >>>GUS::ObjRelP::Generator::Generator::generate('GUS::ObjRelP::Generator::Generator=HASH(\
> > > >>>0x81073d4)', undef) called at /var/local/gus_home/bin/generateGusObjects
> > > >>>line 67
> > > >>>
> > > >>>BUILD FAILED
> > > >>>file:/var/local/checkout/GUS/build.xml:114: exec returned: -1
> > > >>>
> > > >>>
> > > >>>According to the VBI install docs, it is necessary to edit the build.xml
> > > >>>and take out the generateGusObjects executable statement first. But
> > > >>>after this I get the following errors:
> > > >>> [echo] Installing GUS/Model
> > > >>> [javac] Compiling 5 source files to
> > > >>>/var/local/checkout/GUS/Model/classes
> > > >>> [javac]
> > > >>>/var/local/checkout/GUS/Model/src/java/org/gusdb/model/SResVer/MassSpecSummary_Table.java:\
> > > >>>17: illegal start of expression
> > > >>> [javac] tableAtts.put("", new GUSTableAttribute("", "",
> > > >>>"java.lang.notdefyet", -1, , -1, f\
> > > >>>alse, false) );
> > > >>>
> > > >>>[javac] ^
> > > >>> [javac]
> > > >>>/var/local/checkout/GUS/Model/src/java/org/gusdb/model/SResVer/MassSpecSummary_Table.java:\
> > > >>>17: ')' expected
> > > >>> [javac] tableAtts.put("", new GUSTableAttribute("", "",
> > > >>>"java.lang.notdefyet", -1, , -1, f\
> > > >>>alse, false) );
> > > >>>
> > > >>>[javac] \
> > > >>> ^
> > > >>> [javac] 2 errors
> > > >>>
> > > >>>BUILD FAILED
> > > >>>file:/var/local/checkout/install/build.xml:227: Compile failed; see the
> > > >>>compiler error output for deta\
> > > >>>ils.
> > > >>>
> > > >>>
> > > >>>Any help is appreciated....
> > > >>>Michael Luchtan
> > > >>>
> > > >>>
> > > >>>
> > > >>>
> > > >>>
> > > >>>On Wed, 2004-06-09 at 16:10, Steve Fischer wrote:
> > > >>>
> > > >>>
> > > >>>
> > > >>>
> > > >>>>michael-
> > > >>>>
> > > >>>>we have seen this. i think if you get the latest from cvs and then
> > > >>>>rebuild the objects you will get around this problem.
> > > >>>>
> > > >>>>then, use submitrow to add rows to tableinfo for the mass spec tables
> > > >>>>and rebuild all over again.
> > > >>>>
> > > >>>>steve
> > > >>>>
> > > >>>>Michael Luchtan wrote:
> > > >>>>
> > > >>>>
> > > >>>>
> > > >>>>
> > > >>>>
> > > >>>>>Hello--
> > > >>>>>Can you give me a heads up on why I cannot use the submitrow plugin any
> > > >>>>>more, now that I have rebuild the perl object layer? Hope I didn't just
> > > >>>>>screw myself...
> > > >>>>>
> > > >>>>>Here is the command/arguement:
> > > >>>>>
> > > >>>>>luchtan]# ga GUS::Common::Plugin::SubmitRow --tablename Core::UserInfo
> > > >>>>>--attrlist
> > > >>>>>"login,password,first_name,last_name,e_mail,modification_date"
> > > >>>>>--valuelist
> > > >>>>>"pablo^^^pablo123^^^pablo^^^mendes^^^pa...@pa...^^^SYSDATE"
> > > >>>>>Reading properties from /var/local/gus_home/config/GUS-PluginMgr.prop
> > > >>>>>Reading properties from /home/luchtan/.gus.properties
> > > >>>>>DBD::Oracle::st execute failed: ORA-00001: unique constraint
> > > >>>>>(CORE.PK_ALGORITHMINVOCATION) violated (DBD ERROR: OCIStmtExecute) at
> > > >>>>>/var/local/gus_home/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 145.
> > > >>>>>
> > > >>>>>SQL ERROR!! involving
> > > >>>>>
> > > >>>>> INSERT INTO Core.AlgorithmInvocation ( end_time, row_user_id,
> > > >>>>>user_write, group_write, cpu_time, algorithm_implementation_id,
> > > >>>>>row_project_id, algorithm_invocation_id, comment_string, group_read,
> > > >>>>>row_group_id, result, other_read, cpus_used, start_time,
> > > >>>>>modification_date, user_read, row_alg_invocation_id, other_write,
> > > >>>>>machine_id )
> > > >>>>> VALUES ( SYSDATE, ?, ?, ?, ?, ?, ?, ?, '', ?, ?, ?, ?, ?,
> > > >>>>>SYSDATE, SYSDATE, ?, ?, ?, ? )
> > > >>>>>Values: 4, 1, 1, 0, 3, 2, 25, 1, 2, pending, 1, 1, 1, 1, 0, 0 at
> > > >>>>>/var/local/gus_home/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 185
> > > >>>>>
> > > >>>>>GUS::ObjRelP::DbiDbHandle::death('GUS::ObjRelP::DbiDbHandle=HASH(0x855e940)', '^J SQL ERROR!! involving^J ^J INSERT INTO Core.AlgorithmInvocati...') called at /var/local/gus_home/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 148
> > > >>>>>
> > > >>>>>GUS::ObjRelP::DbiDbHandle::sqlExec('GUS::ObjRelP::DbiDbHandle=HASH(0x855e940)', 'GUS::ObjRelP::DbiDbHandle::st=HASH(0x873690c)', 'ARRAY(0x87377c4)', '^J INSERT INTO Core.AlgorithmInvocation ( end_time, row_user_...') called at /var/local/gus_home/lib/perl/GUS/ObjRelP/DbiRow.pm line 674
> > > >>>>>
> > > >>>>>GUS::ObjRelP::DbiRow::quote_and_insert('GUS::Model::Core::AlgorithmInvocation=HASH(0x86ae1ac)', 'HASH(0x86a9574)') called at /var/local/gus_home/lib/perl/GUS/ObjRelP/DbiRow.pm line 621
> > > >>>>>
> > > >>>>>GUS::ObjRelP::DbiRow::insert('GUS::Model::Core::AlgorithmInvocation=HASH(0x86ae1ac)') called at /var/local/gus_home/lib/perl/GUS/Model/GusRow.pm line 1677
> > > >>>>>
> > > >>>>>GUS::Model::GusRow::submit('GUS::Model::Core::AlgorithmInvocation=HASH(0x86ae1ac)') called at /var/local/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 939
> > > >>>>>
> > > >>>>>GUS::PluginMgr::GusApplication::openInvocation('GUS::PluginMgr::GusApplication=HASH(0x80fbb4c)', 'GUS::Common::Plugin::SubmitRow=HASH(0x850872c)') called at /var/local/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 425
> > > >>>>>
> > > >>>>>GUS::PluginMgr::GusApplication::doMajorMode_Run('GUS::PluginMgr::GusApplication=HASH(0x80fbb4c)', 'GUS::Common::Plugin::SubmitRow') called at /var/local/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 283
> > > >>>>>
> > > >>>>>GUS::PluginMgr::GusApplication::doMajorMode('GUS::PluginMgr::GusApplication=HASH(0x80fbb4c)', 'GUS::Common::Plugin::SubmitRow') called at /var/local/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 192
> > > >>>>>
> > > >>>>>GUS::PluginMgr::GusApplication::parseAndRun('GUS::PluginMgr::GusApplication=HASH(0x80fbb4c)', 'ARRAY(0x8102dbc)') called at /var/local/gus_home/bin/ga line 11
> > > >>>>>Issuing rollback() for database handle being DESTROY'd without explicit
> > > >>>>>disconnect().
> > > >>>>>
> > > >>>>>
> > > >>>>>On Wed, 2004-06-09 at 14:52, Steve Fischer wrote:
> > > >>>>>
> > > >>>>>
> > > >>>>>
> > > >>>>>
> > > >>>>>
> > > >>>>>
> > > >>>>>>I have added instructions for this to the wiki. see if you can find it.
> > > >>>>>>
> > > >>>>>>steve
> > > >>>>>>
> > > >>>>>>Michael Luchtan wrote:
> > > >>>>>>
> > > >>>>>>
> > > >>>>>>
> > > >>>>>>
> > > >>>>>>
> > > >>>>>>
> > > >>>>>>
> > > >>>>>>>Hello-
> > > >>>>>>>We are attempting to load some mass spec data into gus. Well, the
> > > >>>>>>>version of gus that we have did not contain two of the relevant tables:
> > > >>>>>>>DoTS.MassSpecFeature and DoTS.MassSpecSummary
> > > >>>>>>>I created the MassSpecFeature view on DoTS.aafeatureimp and the table
> > > >>>>>>>dots.massspecsummary.
> > > >>>>>>>Now we need to generate the GUS objects for the tables for use in
> > > >>>>>>>plug-ins. All of the oerl modules in GUS/Model/* are generated
> > > >>>>>>>automagically. It looks like I could just copy some files and change
> > > >>>>>>>the names. But they all say something like this:
> > > >>>>>>>
> > > >>>>>>># THIS CLASS HAS BEEN AUTOMATICALLY GENERATED BY THE
> > > >>>>>>>GUS::ObjRelP::Generator
> > > >>>>>>># PACKAGE.
> > > >>>>>>>#
> > > >>>>>>># DO NOT EDIT!!
> > > >>>>>>>
> > > >>>>>>># TO ADD FUNCTIONALITY MANUALLY, COPY THIS FILE TO
> > > >>>>>>>InteractionType.pm.man
> > > >>>>>>># (or edit that file if it already exists) AND ADD THE FUNCTIONALITY
> > > >>>>>>>THERE.
> > > >>>>>>># THEN RE-GENERATE THE GUS OBJECTS.
> > > >>>>>>>
> > > >>>>>>>Any word on how to use the Generator? Any help is appreciated. It
> > > >>>>>>>might go well in the Wiki-wiki!
> > > >>>>>>>
> > > >>>>>>>Michael Luchtan
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>>
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