Re: [Gusdev-gusdev] amino acid data upload to GUS

[Deborah F. P. <pi...@pc...>]

Hi Sucheta,


What is the data that you want to load? It is hard to answer the question
generally.

As you probably know already we load data from the protein nr database
files from NCBI and protein motif data from prodom and cdd. Those are
loaded with LoadNRDB.pm (written specifically for NCBI nrdb protein data)
and InsertNewExternalSequences.

We also load signal peptide and transmembrane results from the analysis 
of our assemblies. Those plugins are not in cvs repository at Sanger and 
may not be appropriate for your use. 

                                                        Debbie
On Tue, 18 May 2004, Sucheta Tripathy
wrote:

> 
> Hello All,
> 
> Has anyone tried uploading amino acid related data to GUS(mainly to
> aasequenceImp  and related tables). Is there a plugin for that? I have
> lots of amino acid related data like the signalP output and other
> annotations.
> 
> Any suggestions?
> 
> Thanks
> 
> Sucheta
> 
> 
> 
>