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Re: [Gusdev-gusdev] Re:Error in Building ( in DbiTable.pm)
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From: Dave B. <db...@pc...> - 2004-05-18 19:33:06
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Try now; there was a small bug where that variable was being used out of
scope in an error message. (do a cvs update first on DbiTable).
Dave
On Tue, 18 May 2004, jinal jhaveri wrote:
> Hi,
>
> I finally managed to solve the error. The problem was that I was not re-using the original build file which involves object creation. But now I have another problem as follows
> [exec] Global symbol "$query" requires explicit package name at /home/gus/gushome/lib/perl/GUS/ObjRelP/DbiTable.pm line 554.
> [exec] Compilation failed in require at /home/gus/gushome/lib/perl/GUS/ObjRelP/DbiDatabase.pm line 21.
> [exec] BEGIN failed--compilation aborted at /home/gus/gushome/lib/perl/GUS/ObjRelP/DbiDatabase.pm line 21.
> [exec] Compilation failed in require at /home/gus/gushome/bin/generateGusObjects line 5.
> [exec] BEGIN failed--compilation aborted at /home/gus/gushome/bin/generateGusObjects line 5.
>
> BUILD FAILED
> /home/gus/projects/install/build.xml:25: Following error occured while executing this line
> /home/gus/projects/GUS/build.xml:194: exec returned: -1
>
>
> ----- Original Message -----
> From: Dave Barkan <db...@pc...>
> Date: Tuesday, May 18, 2004 10:09 am
> Subject: Re: [Gusdev-gusdev] Error in Building
>
> > Hey Jinal,
> >
> > These are all 'hand edited' GUS objects; we add additional functionality
> > to them other than that provided by the default java object generator.
> >
> > They should be in CVS right now; their location is
> > {Project_Home}/GUS/Model/src/java/org/gusdb/model/hand_edited. Do you
> > have this directory checked out of CVS?
> >
> > In the hand_edited directory, there are subdirectories corresponding to
> > the GUS schemas. Each hand edited object is within its appropriate
> > schema subdiretory (For example, Taxon.java.man is in SRes and
> > BLATAlignment.java.man is in DoTS.) Make sure you have everything checked
> > out; if you can see the hand edited objects and the build is still
> > failing, let me know.
> >
> > Dave
> >
> >
> > On Tue, 18 May 2004, jinal jhaveri wrote:
> >
> > > Hi,
> > >
> > > I am getting following error while building GUS. It seems like
> > BLATAlignment_Row, and ... files are missing in the current CVS download.
> > Can anyone has an insight into why this could have happened?
> > >
> > > Created dir: /home/gus/gushome/doc/GUS/Model
> > > [mkdir] Created dir: /home/gus/projects/GUS/Model/classes
> > > [javac] Compiling 3 source files to /home/gus/projects/GUS/Model/classes
> > > [javac]
> > /home/gus/projects/GUS/Model/src/java/org/gusdb/model/DoTS/BLATAlignment.java:26: cannot resolve symbol
> > > [javac] symbol : class BLATAlignment_Row
> > > [javac] location: class org.gusdb.model.DoTS.BLATAlignment
> > > [javac] public class BLATAlignment extends BLATAlignment_Row {
> > > [javac] ^
> > > [javac]
> > /home/gus/projects/GUS/Model/src/java/org/gusdb/model/DoTS/NASequence.java:26: cannot resolve symbol
> > > [javac] symbol : class NASequence_Row
> > > [javac] location: class org.gusdb.model.DoTS.NASequence
> > > [javac] public class NASequence extends NASequence_Row {
> > > [javac] ^
> > > [javac]
> > /home/gus/projects/GUS/Model/src/java/org/gusdb/model/SRes/Taxon.java:16: cannot resolve symbol
> > > [javac] symbol : class Taxon_Row
> > > [javac] location: class org.gusdb.model.SRes.Taxon
> > > [javac] public class Taxon extends Taxon_Row {
> > > [javac] ^
> > > [javac]
> > /home/gus/projects/GUS/Model/src/java/org/gusdb/model/DoTS/BLATAlignment.java:34: cannot resolve symbol
> > > [javac] symbol : method getQstarts ()
> > > [javac] location: class org.gusdb.model.DoTS.BLATAlignment
> > > [javac] String starts = getQstarts();
> > > [javac] ^
> > > [javac]
> > /home/gus/projects/GUS/Model/src/java/org/gusdb/model/DoTS/BLATAlignment.java:39: cannot resolve symbol
> > > [javac] symbol : method getBlocksizes ()
> > > [javac] location: class org.gusdb.model.DoTS.BLATAlignment
> > > [javac] String lengths = getBlocksizes();
> > > [javac] ^
> > > [javac]
> > /home/gus/projects/GUS/Model/src/java/org/gusdb/model/DoTS/BLATAlignment.java:44: cannot resolve symbol
> > > [javac] symbol : method getTstarts ()
> > > [javac] location: class org.gusdb.model.DoTS.BLATAlignment
> > > [javac] String tStarts = getTstarts();
> > > [javac] ^
> > > [javac]
> > /home/gus/projects/GUS/Model/src/java/org/gusdb/model/DoTS/NASequence.java:42: cannot resolve symbol
> > > [javac] symbol : method getSequenceLobLength ()
> > > [javac] location: class org.gusdb.model.DoTS.NASequence
> > > [javac] return this.getSequenceAsSymbolList(1,
> > this.getSequenceLobLength().longValue());> [javac]
> > ^
> > > [javac]
> > /home/gus/projects/GUS/Model/src/java/org/gusdb/model/DoTS/NASequence.java:53: cannot resolve symbol
> > > [javac] symbol : method getSequence (long,long)
> > > [javac] location: class org.gusdb.model.DoTS.NASequence
> > > [javac] char seqData[] = this.getSequence(start, end);
> > > [javac] ^
> > > [javac]
> > /home/gus/projects/GUS/Model/src/java/org/gusdb/model/SRes/Taxon.java:34: cannot resolve symbol
> > > [javac] symbol : method getTaxonNameList (boolean)
> > > [javac] location: class org.gusdb.model.SRes.Taxon
> > > [javac] Vector allTaxonNames = getTaxonNameList(false);
> > > [javac] ^
> > > [javac]
> > /home/gus/projects/GUS/Model/src/java/org/gusdb/model/SRes/Taxon.java:57: cannot resolve symbol
> > > [javac] symbol : method getTaxonNameList (boolean)
> > > [javac] location: class org.gusdb.model.SRes.Taxon
> > > [javac] kids = this.getTaxonNameList(true);
> > > [javac] ^
> > > [javac]
> > /home/gus/projects/GUS/Model/src/java/org/gusdb/model/SRes/Taxon.java:66: cannot resolve symbol
> > > [javac] symbol : class TaxonName
> > > [javac] location: class org.gusdb.model.SRes.Taxon
> > > [javac] TaxonName tn = (TaxonName)(kids.elementAt(i));
> > > [javac] ^
> > > [javac]
> > /home/gus/projects/GUS/Model/src/java/org/gusdb/model/SRes/Taxon.java:66: cannot resolve symbol
> > > [javac] symbol : class TaxonName
> > > [javac] location: class org.gusdb.model.SRes.Taxon
> > > [javac] TaxonName tn = (TaxonName)(kids.elementAt(i));
> > > [javac] ^
> > > [javac] 12 errors
> > >
> > >
> > > thanks
> > > --Jinal
> > >
> > >
> > >
> > >
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> >
> >
>
>
>
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