Re: [Gusdev-gusdev] Error in Building

[Dave B. <db...@pc...>]

Hey Jinal,

These are all 'hand edited' GUS objects; we add additional functionality 
to them other than that provided by the default java object generator.

They should be in CVS right now; their location is 
{Project_Home}/GUS/Model/src/java/org/gusdb/model/hand_edited.  Do you 
have this directory checked out of CVS?  

In the hand_edited directory, there are subdirectories corresponding to 
the GUS schemas.  Each hand edited object is within its appropriate 
schema subdiretory (For example, Taxon.java.man is in SRes and 
BLATAlignment.java.man is in DoTS.)  Make sure you have everything checked 
out; if you can see the hand edited objects and the build is still 
failing, let me know.

Dave
 

On Tue, 18 May 2004, jinal jhaveri wrote:

> Hi,
> 
> I am getting following error while building GUS. It seems like BLATAlignment_Row, and ... files are missing in the current CVS download. Can anyone has an insight into why this could have happened?
> 
> Created dir: /home/gus/gushome/doc/GUS/Model
>     [mkdir] Created dir: /home/gus/projects/GUS/Model/classes
>     [javac] Compiling 3 source files to /home/gus/projects/GUS/Model/classes
>     [javac] /home/gus/projects/GUS/Model/src/java/org/gusdb/model/DoTS/BLATAlignment.java:26: cannot resolve symbol
>     [javac] symbol  : class BLATAlignment_Row 
>     [javac] location: class org.gusdb.model.DoTS.BLATAlignment
>     [javac] public class BLATAlignment extends BLATAlignment_Row {
>     [javac]                                    ^
>     [javac] /home/gus/projects/GUS/Model/src/java/org/gusdb/model/DoTS/NASequence.java:26: cannot resolve symbol
>     [javac] symbol  : class NASequence_Row 
>     [javac] location: class org.gusdb.model.DoTS.NASequence
>     [javac] public class NASequence extends NASequence_Row {
>     [javac]                                 ^
>     [javac] /home/gus/projects/GUS/Model/src/java/org/gusdb/model/SRes/Taxon.java:16: cannot resolve symbol
>     [javac] symbol  : class Taxon_Row 
>     [javac] location: class org.gusdb.model.SRes.Taxon
>     [javac] public class Taxon extends Taxon_Row {
>     [javac]                            ^
>     [javac] /home/gus/projects/GUS/Model/src/java/org/gusdb/model/DoTS/BLATAlignment.java:34: cannot resolve symbol
>     [javac] symbol  : method getQstarts ()
>     [javac] location: class org.gusdb.model.DoTS.BLATAlignment
>     [javac]     String starts = getQstarts();
>     [javac]                         ^
>     [javac] /home/gus/projects/GUS/Model/src/java/org/gusdb/model/DoTS/BLATAlignment.java:39: cannot resolve symbol
>     [javac] symbol  : method getBlocksizes ()
>     [javac] location: class org.gusdb.model.DoTS.BLATAlignment
>     [javac]     String lengths = getBlocksizes();
>     [javac]                          ^
>     [javac] /home/gus/projects/GUS/Model/src/java/org/gusdb/model/DoTS/BLATAlignment.java:44: cannot resolve symbol
>     [javac] symbol  : method getTstarts ()
>     [javac] location: class org.gusdb.model.DoTS.BLATAlignment
>     [javac]     String tStarts = getTstarts();
>     [javac]                          ^
>     [javac] /home/gus/projects/GUS/Model/src/java/org/gusdb/model/DoTS/NASequence.java:42: cannot resolve symbol
>     [javac] symbol  : method getSequenceLobLength ()
>     [javac] location: class org.gusdb.model.DoTS.NASequence
>     [javac]     return this.getSequenceAsSymbolList(1, this.getSequenceLobLength().longValue());
>     [javac]                                                ^
>     [javac] /home/gus/projects/GUS/Model/src/java/org/gusdb/model/DoTS/NASequence.java:53: cannot resolve symbol
>     [javac] symbol  : method getSequence (long,long)
>     [javac] location: class org.gusdb.model.DoTS.NASequence
>     [javac]     char seqData[] = this.getSequence(start, end);
>     [javac]                          ^
>     [javac] /home/gus/projects/GUS/Model/src/java/org/gusdb/model/SRes/Taxon.java:34: cannot resolve symbol
>     [javac] symbol  : method getTaxonNameList (boolean)
>     [javac] location: class org.gusdb.model.SRes.Taxon
>     [javac]         Vector allTaxonNames = getTaxonNameList(false);
>     [javac]                                    ^
>     [javac] /home/gus/projects/GUS/Model/src/java/org/gusdb/model/SRes/Taxon.java:57: cannot resolve symbol
>     [javac] symbol  : method getTaxonNameList (boolean)
>     [javac] location: class org.gusdb.model.SRes.Taxon
>     [javac]         kids = this.getTaxonNameList(true);
>     [javac]                    ^
>     [javac] /home/gus/projects/GUS/Model/src/java/org/gusdb/model/SRes/Taxon.java:66: cannot resolve symbol
>     [javac] symbol  : class TaxonName 
>     [javac] location: class org.gusdb.model.SRes.Taxon
>     [javac]         TaxonName tn = (TaxonName)(kids.elementAt(i));
>     [javac]             ^
>     [javac] /home/gus/projects/GUS/Model/src/java/org/gusdb/model/SRes/Taxon.java:66: cannot resolve symbol
>     [javac] symbol  : class TaxonName 
>     [javac] location: class org.gusdb.model.SRes.Taxon
>     [javac]         TaxonName tn = (TaxonName)(kids.elementAt(i));
>     [javac]                             ^
>     [javac] 12 errors
> 
> 
> thanks
> --Jinal
> 
> 
> 
> 
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