Re: [Gusdev-gusdev] GBParser bug

[Angel P. <an...@pc...>]

Fidel Salas wrote:

>There is a bug in the parser that only becomes expressed if the DNA
>sequence goes over 99999999 nucleotides.  An error gets output like this:
>ERR     LINE=2575409    unparsed line   100000021 cggggcgggg agactaggag aaagctgcca gaggctgctg gcaagagata tccactggtt
>
>  
>
Fidel, I suspect that this error is coming from the support gbff parser 
CBIL::GenBank modules. J. Schug is the author and I'll ask him if he 
knows what causes this.

Angel

>The error happens because the parser assumes that there will be spaces
>before the number indicating the nucleotide number.  That is the case
>until the number of nucleotides goes over the threshold value
>indicated above.
>
>Fidel
>
>
>
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