Re: [Gusdev-gusdev] GBParser bug

[Fidel S. <fi...@vb...>]

Steve,

Sorry, I do not have a suggested patch at this moment.

Fidel


Steve Fischer <sfi...@pc...> writes:

     > Thanks Fidel.   Do you have a suggested patch?
>
     > steve
>
     > Fidel Salas wrote:
>
>>There is a bug in the parser that only becomes expressed if the DNA
>>sequence goes over 99999999 nucleotides.  An error gets output like this:
>>ERR     LINE=2575409    unparsed line   100000021 cggggcgggg agactaggag aaagctgcca gaggctgctg gcaagagata tccactggtt
>>
>>The error happens because the parser assumes that there will be spaces
>>before the number indicating the nucleotide number.  That is the case
>>until the number of nucleotides goes over the threshold value
>>indicated above.
>>
>>Fidel
>>
>>
>>
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