[Gusdev-gusdev] GBParser failing to insert features

[Fidel S. <fi...@vb...>]

I used the GBParser plugin to upload some GenBank entry which contains
thousands of features.  However, only 33 features are found in the
database.

The features found in the database are exemplified by the following
two features from the GenBank file:
     gene            complement(142270..143373)
                     /gene="lys9"
                     /locus_tag="APE0193m"
                     /db_xref="GeneID:1445541"
     CDS             complement(142270..143373)
                     /gene="lys9"
                     /locus_tag="APE0193m"
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase"
                     /protein_id="NP_147035.1"
                     /db_xref="GI:14602185"
                     /db_xref="GeneID:1445541"
                     /translation="MVKIAVLGLGRVGLRAAYNLASRGFDVLGLDASNDAVSRARSLG
                     LEARLYDVEGRKAGEYLRGQRVVAAFIALPYPVASRAVAHLSSAGIPVVVASIKPLRI
                     DPGVVRAPILTEVGVSPGLSNVILYSMAAETGGGVSARVYVGSFGAREDGLLSHASTW
                     RVEEMLEQYVTPAKLIQDGSEAVADPLDPSLWMEYSDPEHGVLECFPSQGLAGFISRR
                     GSLFKELMECSLRRRGHLKVVLTMRGLGLLDSTPLKVSGCIVRPFDMAVKLVETRYPP
                     DVGDVAVFTVEARRGGRWETLARASLRHGGGWSASSKMVGGASSAFAEVFAAEGLSEE
                     EPGIIYPEDLYELGLAEKLLSLLPSHGVSLEVG"


The ones that did not make it in look like this:
     gene            complement(213..938)
                     /locus_tag="APE0001"
                     /db_xref="GeneID:1445602"
     CDS             complement(213..938)
                     /locus_tag="APE0001"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_146894.1"
                     /db_xref="GI:14600380"
                     /db_xref="GeneID:1445602"
                     /translation="MVDILSSLLLSLPFGVIGFLLVLSPGSIWTPVKESIGYVYVSRR
                     VTVKASKLLGSLTLLASLISFVVGAAYGITIQASTLALLLALITVVTVEYSMRLAEIE
                     SLNQPVLEGFEPVGSIKLKYLTIILLVYLISIVFSIEGSLKLYSIGAYGTLASHLSIE
                     ILAGYTVFLSVKRPEAYVIPGLSRETIELLQFFMPTSLSLIAIGVYMILAGFHMWWII
                     LLAGVTTLFVVTMLIMINKEGKY"
     gene            complement(938..1276)
                     /locus_tag="APE0002"
                     /db_xref="GeneID:1445577"

The one element that is present in the features that are uploaded but
absent in those that do not is the gene qualifier.

Looking at the schema it is not obvious to me why the gene qualifier
needs to be present in a feature in order to be uploaded.  Am I
missing something more obvious?

Thanks

Fidel