[Gusdev-gusdev] Re: Plasmodium data upload

[Steve F. <st...@pc...>]

fidel-

just talked to bindu.   jessie is in africa.

plasmodb loaded the data directly from the sequencing centers, sanger 
and tigr, and recieved the data in tigr xml format.  bindu will be 
sending you contact info for folks there.  there is a plugin for that.

the DoTS project uses the GBParser to load smaller files than you are 
trying.  The most recent time we ran it, on only a small amount of 
update data, it struggled because of the memory leak.   In past times we 
were using the earlier version of DBD so therre was no leak.

so, you have two options:
  - try GBParser again, after reverting DBD
  - try to get the xml data and go that route.

hope this helps,
steve


Fidel Salas wrote:

>Steve,
>
>I never heard back from either Jessica or Bindu about how the CBIL
>Plasmodium data got uploaded.
>
>Given your report on the memory leakiness of the Oracle::DBD module,
>should I assume that the CBIL data was uploaded with a DBD module that
>did not leak memory?
>
>Thanks
>
>Fidel
>  
>