[Gusdev-gusdev] uploading P. falciparum data

[Fidel S. <fi...@vb...>]

I tried uploding P. falciparum chromosome data using the GBParser and
ran out of memory in all cases.  setMaximumNumberOfObjects is set to
4000000.  The verbose output files contain the line:
VLD     CBIL::Bio::GenBank::Origin      1
more than 20 million times before an =A8out of memory=A8 message is
output.

Here are some of some of the numbers for some of the files:
bash-2.05$ grep VLD NC_004325.gbk-gbparser.out | grep -c Origin
20479965
bash-2.05$ grep VLD NC_004314.gbk-gbparser.out | grep -c Origin
20356504
bash-2.05$ grep VLD NC_004315.gbk-gbparser.out | grep -c Origin
20335688

Has anyone run into something similar before?  How did the people
working on P. falciparum upload the data into GUS?

Thanks

Fidel