Re: [Gusdev-gusdev] GBAAParser

[Thomas O. <ot...@fi...>]

Hi,

I thought a little bit about the stuff. If the NA genbank entry is 
available, namely the most information will be in GUS with the GBParser 
module.
So the GBAAParser could maybe write some information in the 
dots.protein, dots.rna table and so one.

I will think on this.

Cheers,
Thomas
Thomas Otto wrote:

> Hi,
>
> I will try to change the GBParser to upload AA-sequences.
>
> The easiest way might be to change a bit the GBParser...
>
> A question: If I have an entry with
>  source          1..47
>                     /organism="Oryctolagus cuniculus"
>                     /isolate="COF12"
>                     /db_xref="taxon:9986"
>                     /chromosome="1"
>                     /map="1q14-q21"
>                     /clone="22"
>                     /transgenic
>                     /note="Chagas disease"
> I just create a view sourceAA or AAsource on AAFeartureimp, with the 
> rows like organism...
> Does that sounds logic?
>
> Next question: Might it be important to have also the NA - sequence of 
> the AA in the schema?
>
> Cheers,
> Thomas
>
>
>
>
> -------------------------------------------------------
> This SF.Net email is sponsored by: IBM Linux Tutorials
> Free Linux tutorial presented by Daniel Robbins, President and CEO of
> GenToo technologies. Learn everything from fundamentals to system
> administration.http://ads.osdn.com/?ad_id=1470&alloc_id=3638&op=click
> _______________________________________________
> Gusdev-gusdev mailing list
> Gus...@li...
> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev
>