[Gusdev-gusdev] Problem with GBParser

[Thomas O. <ot...@fi...>]

Hello,

I have a little problem trying to insert a sequence from Genbank with 
the GBParser. (Errormessage and sequence-file (a cutted version) see below!)

Looks like, that the table doesn't exists! Do I have to create the table 
or is the GBParser not able to insert this type of entries in general.

I will continue to resolve the problem, but maybe someone might help me.

Thanks a lot,
Thomas


Error msg:
Invalid child name: 'GUS::Model::DoTS::AAFeatureComment' at 
/home/oracle/gus_home/lib/perl/GUS/ObjRelP/DbiTable.pm line 851        
GUS::ObjRelP::DbiTable::addToChildList('GUS::Model::DoTS::Source_Table=HASH(0x8fc9b44)','ARRAY(0x8fee070)','ARRAY(0x8fee0ac)','ARRAY(0x8fee0e8)','ARRAY(0x8fee124)','ARRAY(0x8fee160)','ARRAY(0x8fee19c)','ARRAY(0x8fee1d8)','ARRAY(0x8fee214)',...) 
called at /home/oracle/gus_home/lib/perl/GUS/ObjRelP/DbiTable.pm line 844
        
GUS::ObjRelP::DbiTable::setChildList('GUS::Model::DoTS::Source_Table=HASH(0x8fc9b44)','ARRAY(0x8fee070)','ARRAY(0x8fee0ac)','ARRAY(0x8fee0e8)','ARRAY(0x8fee124)','ARRAY(0x8fee160)','ARRAY(0x8fee19c)','ARRAY(0x8fee1d8)','ARRAY(0x8fee214)',...) 
called at /home/oracle/gus_home/lib/perl/GUS/Model/DoTS/Source_Table.pm 
line 16
        
GUS::Model::DoTS::Source_Table::setDefaultParams('GUS::Model::DoTS::Source_Table=HASH(0x8fc9b44)') 
called at /home/oracle/gus_home/lib/perl/GUS/ObjRelP/DbiTable.pm line 38
        
GUS::ObjRelP::DbiTable::new('GUS::Model::DoTS::Source_Table','GUS::Model::DoTS::Source','GUS::ObjRelP::DbiDatabase=HASH(0x8c0e34c)') 
called at /home/oracle/gus_home/lib/perl/GUS/ObjRelP/DbiDatabase.pm line 179
        
GUS::ObjRelP::DbiDatabase::getTable('GUS::ObjRelP::DbiDatabase=HASH(0x8c0e34c)','GUS::Model::DoTS::Source') 
called
at /home/oracle/gus_home/lib/perl/GUS/ObjRelP/DbiRow.pm line 30
        
GUS::ObjRelP::DbiRow::new('GUS::ObjRelP::DbiRow','GUS::Model::DoTS::Source','HASH(0x8fcb890)','undef','undef') 
called at /home/oracle/gus_home/lib/perl/GUS/Model/GusRow.pm line 25
        
GUS::Model::GusRow::new('GUS::Model::DoTS::Source','HASH(0x8fcb890)') 
called at /home/oracle/gus_home/lib/perl/GUS/Common/Plugin/GBParser.pm 
line 486
        
GUS::Common::Plugin::GBParser::buildFeatures('GUS::Common::Plugin::GBParser=HASH(0x856fbac)','CBIL::Bio::GenBank::Entry=HASH(0x8ec70f4)','GUS::Model::DoTS::ExternalNASequence=HASH(0x8f95ea8)') 
called at /home/oracle/gus_home/lib/perl/GUS/Common/Plugin/GBParser.pm 
line 251
        
GUS::Common::Plugin::GBParser::processEntry('GUS::Common::Plugin::GBParser=HASH(0x856fbac)','CBIL::Bio::GenBank::ArrayStream=HASH(0x8ec7088)') 
called at /home/oracle/gus_home/lib/perl/GUS/Common/Plugin/GBParser.pm 
line 185
        eval {...} called at 
/home/oracle/gus_home/lib/perl/GUS/Common/Plugin/GBParser.pm line 184
        
GUS::Common::Plugin::GBParser::run('GUS::Common::Plugin::GBParser=HASH(0x856fbac)','HASH(0x8e53714)') 
called at /home/oracle/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm 
line 430
        eval {...} called at 
/home/oracle/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 427
        
GUS::PluginMgr::GusApplication::doMajorMode_Run('GUS::PluginMgr::GusApplication=HASH(0x804d00c)','GUS::Common::Plugin::GBParser') 
called at /home/oracle/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm 
line 283
        
GUS::PluginMgr::GusApplication::doMajorMode('GUS::PluginMgr::GusApplication=HASH(0x804d00c)','GUS::Common::Plugin::GBParser') 
called at /home/oracle/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm 
line 192
        
GUS::PluginMgr::GusApplication::parseAndRun('GUS::PluginMgr::GusApplication=HASH(0x804d00c)','ARRAY(0x80606b0)') 
called at /home/oracle/gus_home/bin/ga line 11