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[Gusdev-gusdev] Error with WDK (fwd)
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From: MICHAEL L. <lu...@cs...> - 2004-01-31 12:32:21
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Michael Luchtan http://www.cs.uga.edu/~luchtan ---------- Forwarded message ---------- Date: Thu, 29 Jan 2004 16:44:31 -0500 (EST) From: MICHAEL LUCHTAN <lu...@at...> To: gus...@li... Subject: Error with WDK Hello All- Since the list has been quite for a couple of days, I will go ahead and ask a question with regard to the (unsupported) WDK. This is my first go 'round with tomcat-apache-mod_jk, but I believe that I have it set up correctly. I will give you my set-up: Apache 1.3 Tomcat 4 workers.properties: worker.list=wrkr worker.wrkr.port=8009 worker.wrkr.host=tcruzidb-gusdev.ctegd.uga.edu server.xml(attached) $CATALINA_HOME/webapps/tcruzidb-gusdev/WEB-INF/web.xml (attached) relevant tcruzidb-gusdev.conf for apache: JkMount /*.jsp wrkr JkMount /servlets/* wrkr relevant httpd.conf: JkWorkersFile "/usr/local/tomcat/conf/jk/workers.properties" JkLogFile "/usr/local/tomcat/logs/mod_jk.log" JkLogLevel debug JkLogStampFormat "[%a %b %d %H:%M:%S %Y]" servlet.log: [Jan 29, 2004 2:59:07 PM] <ConnectionPool:MSG> An instance of oracle.jdbc.driver.OracleDriver has already been registered. [Jan 29, 2004 2:59:07 PM] <ConnectionPool:MSG> Opened JDBC connection 0 to jdbc:oracle:thin:@kiwi.rcr.uga.edu:1521:CTEGD [Jan 29, 2004 2:59:07 PM] <ConnectionPool:MSG> Opened JDBC connection 1 to jdbc:oracle:thin:@kiwi.rcr.uga.edu:1521:CTEGD [Jan 29, 2004 2:59:07 PM] <ConnectionPool:MSG> Opened JDBC connection 2 to jdbc:oracle:thin:@kiwi.rcr.uga.edu:1521:CTEGD [Jan 29, 2004 2:59:08 PM] <ConnectionPool:MSG> Opened JDBC connection 3 to jdbc:oracle:thin:@kiwi.rcr.uga.edu:1521:CTEGD [Jan 29, 2004 2:59:08 PM] <ConnectionPool:MSG> Opened JDBC connection 4 to jdbc:oracle:thin:@kiwi.rcr.uga.edu:1521:CTEGD [Jan 29, 2004 2:59:08 PM] <ConnectionPool:MSG> Opened JDBC connection 5 to jdbc:oracle:thin:@kiwi.rcr.uga.edu:1521:CTEGD [Jan 29, 2004 2:59:08 PM] <ConnectionPool:MSG> Opened JDBC connection 6 to jdbc:oracle:thin:@kiwi.rcr.uga.edu:1521:CTEGD [Jan 29, 2004 2:59:08 PM] <ConnectionPool:MSG> Opened JDBC connection 7 to jdbc:oracle:thin:@kiwi.rcr.uga.edu:1521:CTEGD [Jan 29, 2004 2:59:19 PM] <ProcessPool-seqAlignment-0:MSG> Init [Jan 29, 2004 2:59:20 PM] <ProcessPool-seqAlignment-1:MSG> Init [Jan 29, 2004 2:59:20 PM] <ProcessPool-seqAlignment-2:MSG> Init [Jan 29, 2004 2:59:20 PM] <ProcessPool-seqAlignment:MSG> initialized 3 processes [Jan 29, 2004 2:59:21 PM] <ProcessPool-Motifs(G)-0:MSG> Init [Jan 29, 2004 2:59:22 PM] <ProcessPool-Motifs(G)-1:MSG> Init [Jan 29, 2004 2:59:22 PM] <ProcessPool-Motifs(G)-2:MSG> Init [Jan 29, 2004 2:59:22 PM] <ProcessPool-Motifs(G):MSG> initialized 3 processes [Jan 29, 2004 2:59:23 PM] <ProcessPool-NRDB(G)-0:MSG> Init [Jan 29, 2004 2:59:23 PM] <ProcessPool-NRDB(G)-1:MSG> Init [Jan 29, 2004 2:59:24 PM] <ProcessPool-NRDB(G)-2:MSG> Init [Jan 29, 2004 2:59:24 PM] <ProcessPool-NRDB(G):MSG> initialized 3 processes [Jan 29, 2004 2:59:25 PM] <ProcessPool-BLAT search-0:MSG> Init [Jan 29, 2004 2:59:25 PM] <ProcessPool-BLAT search-1:MSG> Init [Jan 29, 2004 2:59:25 PM] <ProcessPool-BLAT search:MSG> initialized 2 processes [Jan 29, 2004 2:59:27 PM] <ProcessPool-Assembly(G)-0:MSG> Init [Jan 29, 2004 2:59:27 PM] <ProcessPool-Assembly(G)-1:MSG> Init [Jan 29, 2004 2:59:28 PM] <ProcessPool-Assembly(G)-2:MSG> Init [Jan 29, 2004 2:59:29 PM] <ProcessPool-Assembly(G)-3:MSG> Init [Jan 29, 2004 2:59:29 PM] <ProcessPool-Assembly(G)-4:MSG> Init [Jan 29, 2004 2:59:29 PM] <ProcessPool-Assembly(G):MSG> initialized 5 processes [Jan 29, 2004 2:59:30 PM] <ProcessPool-Features(G)-0:MSG> Init [Jan 29, 2004 2:59:31 PM] <ProcessPool-Features(G)-1:MSG> Init [Jan 29, 2004 2:59:31 PM] <ProcessPool-Features(G)-2:MSG> Init [Jan 29, 2004 2:59:32 PM] <ProcessPool-Features(G)-3:MSG> Init [Jan 29, 2004 2:59:32 PM] <ProcessPool-Features(G)-4:MSG> Init [Jan 29, 2004 2:59:32 PM] <ProcessPool-Features(G):MSG> initialized 5 processes [Jan 29, 2004 2:59:34 PM] <ObjectFile:ERROR> No value provided for mandatory property gene.DefaultTaxonId [Jan 29, 2004 2:59:35 PM] <ObjectFile:ERROR> Could not determine class for dummyF [Jan 29, 2004 2:59:36 PM] <ProcessPool-sequence-0:MSG> Init [Jan 29, 2004 2:59:37 PM] <ProcessPool-sequence-1:MSG> Init [Jan 29, 2004 2:59:37 PM] <ProcessPool-sequence:MSG> initialized 2 processes [Jan 29, 2004 2:59:38 PM] <SiteServlet:MSG> init() completed [Jan 29, 2004 2:59:38 PM] <SiteServlet:MSG> debug = true I did an install of the WDK, just using the dotsgenes pages, but when I try to follow a link for a server, for example for the URL: http://tcruzidb-gusdev.ctegd.uga.edu/servlets/?page=query&showForm=1&query=locuslinkID I get the following message: Apache Tomcat/4.0.6 - HTTP Status 404 - /servlets/ type Status report message /servlets/ description The requested resource (/servlets/) is not available. What confuses me a little is that the URL does not request an obvious servlet. When looking at tomcat examples, the URL will reflect the name of the servlet, and one can easily find the corresponding class file. The contents of the servlets directory: servlets]# ls -l total 600 -rwxr-xr-x 1 tomcat tomcat 433964 Jan 29 14:33 gus-servlet.jar drwxr-xr-x 2 tomcat tomcat 4096 Jan 29 14:33 scripts -rwxr-xr-x 1 tomcat tomcat 161084 Jan 29 14:33 servlet-config -rwxr-xr-x 1 tomcat tomcat 3378 Jan 29 14:59 servlet.log and the scripts: servlets]# ls scripts/ -l total 36 -rwxr-xr-x 1 tomcat tomcat 199 Jan 29 14:33 README -rwxr-xr-x 1 tomcat tomcat 1375 Jan 29 14:33 assemblyCAP2.pl -rwxr-xr-x 1 tomcat tomcat 1142 Jan 29 14:33 assemblyGraphic.pl -rwxr-xr-x 1 tomcat tomcat 4463 Jan 29 14:33 blatLink.pl -rwxr-xr-x 1 tomcat tomcat 1632 Jan 29 14:33 naSeq.pl -rwxr-xr-x 1 tomcat tomcat 1166 Jan 29 14:33 proteinGraphic.pl -rwxr-xr-x 1 tomcat tomcat 1159 Jan 29 14:33 rnaMotifs.pl -rwxr-xr-x 1 tomcat tomcat 1096 Jan 29 14:33 rnaProtSim.pl I know that this e-mail is all over the place, but I'm not sure where the problem lies and wanted to make sure that everyone had any necessary information. Can anyone give me some tips? Michael Luchtan http://www.cs.uga.edu/~luchtan |
