Re: [Gusdev-gusdev] DoTS:NAEntry and topology

[Angel P. <an...@pc...>]

Adding the column will not break anythiing, although I ask you to post a 
tracker item on the SF.net site. :

http://sourceforge.net/tracker/?atid=479181&group_id=54213&func=browse

Also, please attach the SQL to make that makes the new table, transfers 
the data, apply constraints  and rename the tables appropriately, etc., 
to the tracker item. Since you have to do these actions regardless, it 
would be nice to share them as a script ;)

I'll commit the change to CVS when I make the other changes that are 
needed for GUS 3.1

Angel

Fidel Salas wrote:

>Chris Stoeckert <sto...@pc...> writes:
>
>     > Hi Fidel,
>
>Hi Chris.  Thanks for your response.
>
>     > What are you trying to get from LOCUS?
>     > Here's an example for the kit gene (maybe you can send me a more
>     > relevant one for you).
>     > LOCUS NM_021099 5132 bp mRNA linear ROD 20-DEC-2003
>     > Is it the "linear" info?
>
>Yes, it is the "linear" (or "circular") info.
>
>     > I agree that NAEntry table would be a good place for this and I would
>     > recommend that the NAEntry table have a "topology" attribute added.
>     > I'm guessing that this information was lost because it's not something
>     > that we at CBIL use.
>
>Understood.
>
>     > My understanding is that nothing should should break by adding this
>     > column but would like others to confirm (Steve? Angel?)
>
>It sounds good.
>
>Fidel
>
>
>     > I also don't think that you would need to add set/get methods just
>     > alter the existing one for NAEntry.
>  
>
>     > Chris
>  
>
>     > On Jan 6, 2004, at 11:35 AM, Fidel Salas wrote:
>  
>
>     > I need help in finding a quick solution to the following requirement.
>  
>
>     > I need topology information for any given GenBank DNA sequence or
>     > entry.  This information is found in the LOCUS line of a GenBank
>     > entry.  For reasons unclear to me, the GBParser plugin parses this and
>     > then silently drops it.
>  
>
>     > Since I am about to create a new GUS database, I would like to add a
>     > column to DoTS:NAEntry that will hold the topology information.  The
>     > main question is: will I break anything if I add this column to the
>     > tables sql script?
>  
>
>     > Also, what is the reason this information is dropped?
>  
>
>     > I am assuming getting GBParser to populate this new column would
>     > involve just getting the objrelp generator to add set and get methods.
>     > Is this all that would need to be done?
>  
>
>     > Thanks
>  
>
>     > Fidel
>  
>
>>
>>
>>    
>>
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