Re: [Gusdev-gusdev] help with installation

[Chris S. <sto...@pc...>]

Hi Matthew,
I believe this is a know problem (you need to have a GUS instance to 
create a GUS instance) but there is a workaround. see section 2.4 of 
Terry Clark's installation 
guide.http://www.gusdb.org/documentation/installguide.html
BTW, most of CBIL is on holiday until Jan 5 so you may not get much in 
the way of response from us until then.
Cheers,
Chris


On Dec 23, 2003, at 8:50 PM, Matthew Hobbs wrote:

> Hi,
>
> I am trying to set up a GUS based system. Having managed to set up an 
> Oracle
> system suitable for prototyping I am now trying the GUS installation 
> but have
> hit a snag when building 'install' and 'GUS'  targets (see below).  
> The error
> suggests that a table is not found but I thought this build was a
> prerequistite for installing the GUS schema?  i.e. I have made a GUS 
> database
> but it hasn't got tables in it yet...
>
> Having spent so much effort with Oracle set up I'd really appreciate 
> any
> advice on how to progess!
>
> Thanks very much,
>
>
> Matthew
>
>
> ant -f /home/matthew/GUS/projects/install/build.xml install -Dproj=GUS
> -DtargetDir=/home/matthew/GUS/gushome -Dcomp= 
> -DprojectsDir=/home/matthew/
> GUS/p
> rojects  -Dappend=true   -logger org.apache.tools.ant.NoBannerLogger | 
> grep
> ']'
>
>      [echo] .
>      [echo] Installing CBIL/Bio
>      [echo] .
>      [echo] Installing CBIL/CSP
>      [echo] .
>      [echo] Installing CBIL/Util
>    [concat] Warning: Could not find any of the files specified in 
> concat task.
>      [echo] .
>      [echo] Installing GUS/Common
>      [echo] .
>      [echo] Installing GUS/DBAdmin
>      [echo] .
>      [echo] Installing GUS/GOPredict
>      [echo] .
>      [echo] Installing GUS/ObjRelP
>      [echo] generating Perl Objects
>      [exec] Reading properties from /home/matthew/.gus.properties
>      [exec] DBD::Oracle::db prepare failed: ORA-00942: table or view 
> does not
> exist (DBD ERROR: OCIStmtExecute/Describe) [for Statement "select 
> d.name
> ,t.name,t.is_view from Core.TableInfo t, Core.DatabaseInfo d where
> d.database_id = t.database_id"] at 
> /home/matthew/GUS/gushome/lib/perl/GUS/
> ObjRelP/D
> biDbHandle.pm line 78.
>      [exec] Prepare FAILED: ORA-00942: table or view does not exist 
> (DBD
> ERROR: OCIStmtExecute/Describe)
>      [exec]  sql_cmd:
>      [exec]  select d.name,t.name,t.is_view from Core.TableInfo t,
> Core.DatabaseInfo d where d.database_id = t.database_id
>      [exec] Can't call method "execute" without a package or object 
> reference
> at /home/matthew/GUS/gushome/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 
> 79
> .
>
> BUILD FAILED
> file:/home/matthew/GUS/projects/GUS/build.xml:194: exec returned: 22
>
> Total time: 5 seconds
>
>
>
> -- 
> Matthew Hobbs         Research Fellow in Bioinformatics
> Faculty of Veterinary Science
> Building B19, University of Sydney, NSW 2006, Australia
> Phone: +61 2 9351 3154              Fax: +61 2 93513957
>
>
>
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