[Gusdev-gusdev] help with installation

[Matthew H. <mat...@ve...>]

Hi,

I am trying to set up a GUS based system. Having managed to set up an Oracle 
system suitable for prototyping I am now trying the GUS installation but have 
hit a snag when building 'install' and 'GUS'  targets (see below).  The error 
suggests that a table is not found but I thought this build was a 
prerequistite for installing the GUS schema?  i.e. I have made a GUS database 
but it hasn't got tables in it yet...

Having spent so much effort with Oracle set up I'd really appreciate any 
advice on how to progess!

Thanks very much,


Matthew


ant -f /home/matthew/GUS/projects/install/build.xml install -Dproj=GUS 
-DtargetDir=/home/matthew/GUS/gushome -Dcomp= -DprojectsDir=/home/matthew/
GUS/p
rojects  -Dappend=true   -logger org.apache.tools.ant.NoBannerLogger | grep 
']'

     [echo] .
     [echo] Installing CBIL/Bio
     [echo] .
     [echo] Installing CBIL/CSP
     [echo] .
     [echo] Installing CBIL/Util
   [concat] Warning: Could not find any of the files specified in concat task.
     [echo] .
     [echo] Installing GUS/Common
     [echo] .
     [echo] Installing GUS/DBAdmin
     [echo] .
     [echo] Installing GUS/GOPredict
     [echo] .
     [echo] Installing GUS/ObjRelP
     [echo] generating Perl Objects
     [exec] Reading properties from /home/matthew/.gus.properties
     [exec] DBD::Oracle::db prepare failed: ORA-00942: table or view does not 
exist (DBD ERROR: OCIStmtExecute/Describe) [for Statement "select d.name
,t.name,t.is_view from Core.TableInfo t, Core.DatabaseInfo d where 
d.database_id = t.database_id"] at /home/matthew/GUS/gushome/lib/perl/GUS/
ObjRelP/D
biDbHandle.pm line 78.
     [exec] Prepare FAILED: ORA-00942: table or view does not exist (DBD 
ERROR: OCIStmtExecute/Describe)
     [exec]  sql_cmd:  
     [exec]  select d.name,t.name,t.is_view from Core.TableInfo t, 
Core.DatabaseInfo d where d.database_id = t.database_id 
     [exec] Can't call method "execute" without a package or object reference 
at /home/matthew/GUS/gushome/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 79
.

BUILD FAILED
file:/home/matthew/GUS/projects/GUS/build.xml:194: exec returned: 22

Total time: 5 seconds



-- 
Matthew Hobbs         Research Fellow in Bioinformatics
Faculty of Veterinary Science
Building B19, University of Sydney, NSW 2006, Australia
Phone: +61 2 9351 3154              Fax: +61 2 93513957