[Gusdev-gusdev] pipeline programs and GUS

[sucheta T. <su...@vb...>]

Hi Steve,

I have several questions regarding the pipeline programs that can be run
in GUS.

We have sequences that are not annotated (both genomic and EST sequences).
We want them to be run through cleaning, assembly protocols followed by
several other programs for annotation.

Apart from that for the genome sequences we have extra requirements like
storing the data from each prediction program, having EST-genome mapped
data, intron, exon data and so on...

Is it possible to run all these programs through the pipeline, or there is
a list of programs that can only be passed through the pipeline(If so,
where can I look for them).

In order to put the annotated data into database, do I have to use other
plugins or the pipeline looks after them.

Thanks

Sucheta



-- 
Sucheta Tripathy
Virginia Bioinformatics Institute
1880 pratt drive,Bldg XV
Virginia tech.
Blacksburg
Virginia
VA 24061
phone-(540)231-8138