[Gusdev-gusdev] Re: InsertNewExternalSequences errors

[Steve F. <sfi...@pc...>]

sucheta-

looking at the plugin code, it seems that you can only specify one table 
to insert into.
 
but, you are inserting into two:

--table_name=DoTS::ExternalNASequence, DoTS::VirtualSequence

as far as which table to use, what is the data you are inserting?

steve

sucheta Tripathy wrote:

>Hi Steve,
>
>I used the GUS::Common::Plugin::InsertNewExternalSequences for uploading
>our local nucleotide sequences with the following parameters:
>
>ga GUS::Common::Plugin::InsertNewExternalSequences --algoinvo=2
>--comment=Loading external NA Sequence --debug
>--external_database_release_id=1 --no_check --seq
>uence_type_id=1
>--sequencefile=/usr/local/src/gus-related/seq/soybean_clean.seq
>--startAt=0 --table_name=DoTS::ExternalNASequence, DoTS::VirtualSequence
>--taxon
>_id=143371 --update --sqlVerbose
>--writeFile=/usr/local/src/gus-related/seq/temp
> >& /home/apps/oracle/externalna_err1
>
>It gives me the following error:
>
>Can't locate object method "new" via package "_Table" at
>/home/apps/gus/gushome/
>lib/perl/GUS/ObjRelP/DbiDatabase.pm line 179.
>
>My assumption is that since we are using a view name in the table_name
>parameter it gives the error. In case that is the problem, can you please
>tell us which table the data should go without violating much of the
>dependencies?
>
>Thanks in advance
>
>Sucheta
>
>  
>