[Gusdev-gusdev] InsertNewExternalSequences errors

[sucheta T. <su...@vb...>]

Hi Steve,

I used the GUS::Common::Plugin::InsertNewExternalSequences for uploading
our local nucleotide sequences with the following parameters:

ga GUS::Common::Plugin::InsertNewExternalSequences --algoinvo=2
--comment=Loading external NA Sequence --debug
--external_database_release_id=1 --no_check --seq
uence_type_id=1
--sequencefile=/usr/local/src/gus-related/seq/soybean_clean.seq
--startAt=0 --table_name=DoTS::ExternalNASequence, DoTS::VirtualSequence
--taxon
_id=143371 --update --sqlVerbose
--writeFile=/usr/local/src/gus-related/seq/temp
 >& /home/apps/oracle/externalna_err1

It gives me the following error:

Can't locate object method "new" via package "_Table" at
/home/apps/gus/gushome/
lib/perl/GUS/ObjRelP/DbiDatabase.pm line 179.

My assumption is that since we are using a view name in the table_name
parameter it gives the error. In case that is the problem, can you please
tell us which table the data should go without violating much of the
dependencies?

Thanks in advance

Sucheta

-- 
Sucheta Tripathy
Virginia Bioinformatics Institute
1880 pratt drive,Bldg XV
Virginia tech.
Blacksburg
Virginia
VA 24061
phone-(540)231-8138