Re: [Gusdev-gusdev] missing GO modules

[Dave B. <db...@pc...>]

Hey Terry, sorry for not getting back sooner on this.

The classes have all been merged into one table, 'GOAssociation,' which 
makes associations between a generic row in the database (usually 
representing a sequence, and indicated by the 'table_id' and 'row_id' 
attributes in the GOAssociation table) and a GO Term.

I'm not sure what the plugin uses those tables for, let me take a look and 
make sure it's nothing out of the ordinary.  Generally, converting to GUS 
3.0 is a matter of simply understanding the schema and a few of the new 
conventions that plugins follow.  I will send you a document (if for 
nothing else than posterity) that has general details about the process.

Dave

On Wed, 1 Oct 2003, Terry Clark wrote:

> I just stumbled into some modules missing in
> the current GUS distribution that are 
> used by plugin LoadGeneFeaturesFromXML.pm :
> 
>   require GUS::Model::DoTS::AASequenceGOProcess;
>   require GUS::Model::DoTS::AASequenceGOComponent;
>   require GUS::Model::DoTS::AASequenceGOFunction;
> 
>   require GUS::Model::DoTS::ProteinGOProcess;
>   require GUS::Model::DoTS::ProteinGOComponent;
>   require GUS::Model::DoTS::ProteinGOFunction;
> 
> It looks like they have not been converted to GUS 3.0 yet
> (with a strong hint in TASK_GoAnnotation(): ### NOTE: NOT YET UPDATED).
> I'm willing to take a shot at updating these, but I don't
> know where to find them (and what's involved in converting 
> 2.0 to 3.0 so I should be careful about volunteering ;-)
> 
> Terry
> 
> 
> 
> 
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