Re: [Gusdev-gusdev] Re: plugin for XML

[Terry C. <tw...@cs...>]

Steve, this is a good idea. I'm working on it.

Terry


On  0, Steve Fischer <st...@pc...> wrote:
> Terry-
> 
> as a follow-on to my last mail, it might be interesting to see how far 
> you can get defining a mapping for the TIGR XML format used by 
> LoadGeneFeaturesFromXML.  if you could do that, i think that would 
> demonstrate a major advance for us.
> 
> steve
> 
> Terry Clark wrote:
> 
> >Posted for discussion at 
> >   http://flora.uchicago.edu/ 
> >is a short specification  sketched (working draft) 
> >for an XML-to-GUS Plugin for GUS' NASequenceImp, LoadSeqFromXML.pm.
> >
> >The idea, based on the XML to DB/SQL work by Ron Bourret,
> >is to give a flexible way to map various sequence
> >data management projects into GUS using the same source.
> >The Plugin operates from 1) an XML formatted sequence file
> >and 2) a mapping from the sequence file to GUS space. 
> >
> >The method is generally applicable to GUS objects/tables,
> >but the idiosyncracies of objects probably calls for
> >individual mappers, like  LoadSeqFromXML.pm 
> >(better named as LoadNASequenceFromXML.pm).  
> >
> >Are there any thoughts, variations, existing work, etc.,
> >about the idea?
> >
> >Terry
> > 
> >
> 
> 
> 
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