Re: [Gusdev-gusdev] LoadGeneFeaturesFromXML error

[Steve F. <st...@pc...>]

Michael-

i don't know what the state of that plugin is.  it may be under 
construction.  you'l have to work with bindu on that.

bi...@sa...

steve

MICHAEL LUCHTAN wrote:

>Some more information:
>Error occurs in method setAlgId, which sets name to 'Pf Annotation'.
>So when running this module with --verbose, there is an error like:
>
>
>RetrieveFromDB: select * from Core.Algorithm where  name = ?
>  bindValues (Pf Annotation)
>ERROR in returning AlgId
>Wed May 28 10:55:43 2003	RESULT	1
>
>
>
>And here is what I get from a
>select name from core.algorithm:
>
>
>SQL> select name from core.algorithm;
>
>NAME
>--------------------------------------------------------------------------------
>GA-Plugin
>GUS::Common::Plugin::LoadTaxon
>GUS::Common::Plugin::AnnotatorsInterfaceSubmitter
>GUS::Common::Plugin::dbEST
>GUS::Common::Plugin::DeleteSimilarities
>GUS::Common::Plugin::InsertNewExternalSequences
>GUS::Common::Plugin::LoadDocumentation
>GUS::Common::Plugin::LoadNRDB
>GUS::Common::Plugin::MakeIndexWordLink
>GUS::Common::Plugin::MakeIndexWordSimLink
>GUS::Common::Plugin::OrthologGroupsMCL
>
>NAME
>--------------------------------------------------------------------------------
>GUS::Common::Plugin::SubmitRow
>GUS::Common::Plugin::UpdateGusFromCla
>GUS::Common::Plugin::UpdateGusFromXML
>GUS::GOPredict::Plugin::LoadGoAssoc
>GUS::GOPredict::Plugin::LoadGoOntology
>GUS::Common::Plugin::LoadGeneFeaturesFromXML
>SQL*PLUS
>GUS::Common::Plugin::GBParser
>GUS::Common::Plugin::LoadBlastSimilaritiesPK
>
>20 rows selected.
>
>
>Do I need to change line 216 in LoadGeneFeaturesFromXML from
> my %alg = ( name => 'Pf Annotation' );
>to
> my %alg = ( name => 'GUS::Common::Plugin::LoadGeneFeaturesFromXML' );
>??
>
>Michael Luchtan
>http://www.cs.uga.edu/~luchtan
>
>
>
>
>
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