Re: [Gusdev-gusdev] LoadGeneFeaturesFromXML error

[MICHAEL L. <lu...@cs...>]

Some more information:
Error occurs in method setAlgId, which sets name to 'Pf Annotation'.
So when running this module with --verbose, there is an error like:


RetrieveFromDB: select * from Core.Algorithm where  name = ?
  bindValues (Pf Annotation)
ERROR in returning AlgId
Wed May 28 10:55:43 2003	RESULT	1



And here is what I get from a
select name from core.algorithm:


SQL> select name from core.algorithm;

NAME
--------------------------------------------------------------------------------
GA-Plugin
GUS::Common::Plugin::LoadTaxon
GUS::Common::Plugin::AnnotatorsInterfaceSubmitter
GUS::Common::Plugin::dbEST
GUS::Common::Plugin::DeleteSimilarities
GUS::Common::Plugin::InsertNewExternalSequences
GUS::Common::Plugin::LoadDocumentation
GUS::Common::Plugin::LoadNRDB
GUS::Common::Plugin::MakeIndexWordLink
GUS::Common::Plugin::MakeIndexWordSimLink
GUS::Common::Plugin::OrthologGroupsMCL

NAME
--------------------------------------------------------------------------------
GUS::Common::Plugin::SubmitRow
GUS::Common::Plugin::UpdateGusFromCla
GUS::Common::Plugin::UpdateGusFromXML
GUS::GOPredict::Plugin::LoadGoAssoc
GUS::GOPredict::Plugin::LoadGoOntology
GUS::Common::Plugin::LoadGeneFeaturesFromXML
SQL*PLUS
GUS::Common::Plugin::GBParser
GUS::Common::Plugin::LoadBlastSimilaritiesPK

20 rows selected.


Do I need to change line 216 in LoadGeneFeaturesFromXML from
 my %alg = ( name => 'Pf Annotation' );
to
 my %alg = ( name => 'GUS::Common::Plugin::LoadGeneFeaturesFromXML' );
??

Michael Luchtan
http://www.cs.uga.edu/~luchtan