[Gusdev-gusdev] format of sequences for blast

[Jessica K. <jki...@ug...>]

Hello all,

	If memory serves me correct, once sequences were loaded into 
GUS, we then retrieved them along with their GUS ID to submit for 
blast searches.

	When we retrieved the sequences, we created a custom format 
for the header line, such that the blast results once generated for 
these sequences could be easily parsed and loaded with the existing 
plug-in.

	Can someone tell me what the format of the fasta header 
should be, i.e is it ">GUSID, External_NA _sequence Name" or the 
other way around and should there be any formatting, tabs, spaces 
etc.  If I remember correctly, the blast results were loaded by GUSID 
not "name", but I don't remember.

	Thanks

	Jessie
-- 
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Jessica Kissinger
Center for Tropical & Emerging Global Diseases
& Department of Genetics
University of Georgia
422 Biological Sciences
Athens, GA 30602-2606

TEL: +1 (706) 542-6562/6563
FAX: +1 (706) 542-3582
e-mail    jki...@ar...
http://www.ctegd.uga.edu/people_pages/kissinger.html
PGP-Key: http://www.arches.uga.edu/~jkissing/public_key.html
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