Re: [Gusdev-gusdev] repetitive use of GBParser/plugin - of out of tablespace

[Deborah F. P. <pi...@pc...>]

Hi Chetna,

In the case of this particular plugin, you won't get duplicates created in
the db by running it again. However, there is an option, --start, that
allows you to stipulate where you left off in a particular file and then
continue from there saving you running time.

You should have a log file with ouput from the plugin that looks something
like this:

STATUS: N=17 ACCS=AL671875 TOTAL_OBJECTS=123 TIME=Thu Feb  6 14:07:19 EST 
2003
INSERTED: AL671875; N=17

Use the value of N for the last completed entry for --start. 

                                                         Debbie




On Wed, 14 May 2003, 
Chetna D. Warade wrote:

> 
> Hey all,
> 
> I am working with Michael to load GenBank stuff in gus 3.0.
> Right our database is out of tablespace. My question is: Does repetitive 
> use of plugin/GBParser resume where it left off or will it try to load 
> everything from scratch.
> 
> Situation here:
> Due to limited tablespace we could successfully load 18079 rows in the 
> database (dots.ExternalNASequence and Dots.NAEntry). I am adding more 
> tablespace and then re-run the GBParser on the same GenBank file. At the 
> least I expect the primary key failure error for first 18079 rows and 
> then   
> GBParser should be able to load the remaining ones.
> 
> It would be great if someone can give insight.
> 
> Thanks,
> Chetna
> 
> 
> 
> 
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