[Gusdev-gusdev] GBParser Failures...:(

[MICHAEL L. <lu...@cs...>]

Hello-
We have advanced a little further in our effort to get the gbparser plugin
running on a new GUS installation.  Thank you for the help so far, and we
have resolved the dependency regarding the Dots.sequencetype table, but
unfortunately we have new dependency errors.  Here a snapshot from the
generated error log:



 ------------------ entry number 1 -----------------

 SQL ERROR!! involving

    INSERT INTO DoTS.NAEntry (  created_date, row_user_id, user_write,
group_write, created_rel_ver, na_sequence_id, row_project_id, group_read,
row_group_id, other_read, na_entry_id, source_id, modification_date,
user_read, row_alg_invocation_id, other_write, version, division )
    VALUES   (  ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, SYSDATE, ?, ?, ?, ?, ?
)
 Values: 2003-5-03 00:00:00, 6, 1, 1, 135, 1809, 2, 1, 3, 1, 205,
AY140947, 1, 138, 0, 1, INV at
/home/gus_home/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 184

GUS::ObjRelP::DbiDbHandle::death('GUS::ObjRelP::DbiDbHandle=HASH(0x8afbd68)',
'^J SQL ERROR!! involving^J ^J    INSERT INTO DoTS.NAEntry (  create...')
called at /home/gus_home/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 147

GUS::ObjRelP::DbiDbHandle::sqlExec('GUS::ObjRelP::DbiDbHandle=HASH(0x8afbd68)',
'GUS::ObjRelP::DbiDbHandle::st=HASH(0x8f3e0ec)', 'ARRAY(0x8f3c990)', '^J
INSERT INTO DoTS.NAEntry (  created_date, row_user_id, user...') called at
/home/gus_home/lib/perl/GUS/ObjRelP/DbiRow.pm line 674

GUS::ObjRelP::DbiRow::quote_and_insert('GUS::Model::DoTS::NAEntry=HASH(0x8d72bf0)',
'HASH(0x8f3c810)') called at /home/gus_home/lib/perl/GUS/ObjRelP/DbiRow.pm
line 621

GUS::ObjRelP::DbiRow::insert('GUS::Model::DoTS::NAEntry=HASH(0x8d72bf0)')
called at /home/gus_home/lib/perl/GUS/Model/GusRow.pm line 1677

GUS::Model::GusRow::submit('GUS::Model::DoTS::NAEntry=HASH(0x8d72bf0)',
undef, 1) called at /home/gus_home/lib/perl/GUS/Model/GusRow.pm line 1765

GUS::Model::GusRow::submitChildrenInClass('GUS::Model::DoTS::ExternalNASequence=HASH(0x8d6b500)',
'GUS::Model::DoTS::NAEntry') called at
/home/gus_home/lib/perl/GUS/Model/GusRow.pm line 1746

GUS::Model::GusRow::submitAllChildren('GUS::Model::DoTS::ExternalNASequence=HASH(0x8d6b500)')
called at /home/gus_home/lib/perl/GUS/Model/GusRow.pm line 1684

GUS::Model::GusRow::submit('GUS::Model::DoTS::ExternalNASequence=HASH(0x8d6b500)')
called at /home/gus_home/lib/perl/GUS/Common/Plugin/GBParser.pm line 284

GUS::Common::Plugin::GBParser::processEntry('GUS::Common::Plugin::GBParser=HASH(0x84be838)',
'CBIL::Bio::GenBank::ArrayStream=HASH(0x8ccac48)') called at
/home/gus_home/lib/perl/GUS/Common/Plugin/GBParser.pm line 185
	eval {...} called at
/home/gus_home/lib/perl/GUS/Common/Plugin/GBParser.pm line 184

GUS::Common::Plugin::GBParser::run('GUS::Common::Plugin::GBParser=HASH(0x84be838)',
'HASH(0x8c60dc8)') called at
/home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 389
	eval {...} called at
/home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 385

GUS::PluginMgr::GusApplication::doMajorMode_Run('GUS::PluginMgr::GusApplication=HASH(0x80fbb0c)',
'GUS::Common::Plugin::GBParser') called at
/home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 284

GUS::PluginMgr::GusApplication::doMajorMode('GUS::PluginMgr::GusApplication=HASH(0x80fbb0c)',
'GUS::Common::Plugin::GBParser') called at
/home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 193

GUS::PluginMgr::GusApplication::parseAndRun('GUS::PluginMgr::GusApplication=HASH(0x80fbb0c)',
'ARRAY(0x8105130)') called at /home/gus_home/bin/ga line 11


Thank you...

Michael Luchtan
http://www.cs.uga.edu/~luchtan