Re: [Gusdev-gusdev] LoadGoOntology

[Chetna D. W. <ch...@ug...>]

Hi Dave,

Thanks for looking into it. As Jonathan said in the previous email, he 
is right about the fact that LoadGoAssoc uses GeneAssocParser/Parser 
whereas LoadGoOntology uses GeneOntologyParser/Parser. 

I really appreciate your help. Please do let me know when could I 
download the new release of CBIL project.

Thanks,
Chetna

---------Included Message----------
>Date: Fri, 18 Apr 2003 10:51:11 -0400 (EDT)
>From: "Dave Barkan" <db...@pc...>
>To: "Chetna D. Warade" <ch...@ug...>
>Cc: <gus...@li...>
>Subject: Re: [Gusdev-gusdev] LoadGoOntology
>
>Hi Chetna,
>
>I'm not sure why it's failing on your particular run, but I think the 
>first thing to try is downloading a new release of the CBIL project.  
The 
>GeneOntologyParser has undergone some minor changes recently so it 
>definitely couldn't hurt.
>
>Before you do that, we should definitely create a new release.  I will 

>talk to Steve about it and let you know when it is safe to proceed.
>
>Thanks,
>Dave
>
>
>On Thu, 17 Apr 2003, Chetna D. Warade wrote:
>
>> Hi,
>> 
>> I am trying to:
>> ga GUS::GOPredict::Plugin::LoadGoOntology --usage and I am getting 
@INC 
>> error whereas when I run:
>> ga GUS::GOPredict::Plugin::LoadGoAssoc --usage <--- runs fine!
>> 
>> Following is the error:
>> 
>> [chetna@mango Plugin]$ ga GUS::GOPredict::Plugin::LoadGoOntology 
>> --usage
>> Reading properties from /home/gus_home/config/GUS-PluginMgr.prop
>> 
>> ERROR: Can't locate CBIL/Bio/GeneOntologyParser/Parser.pm in @INC 
(@INC 
>> contains: /home/gus_home/lib/perl /usr/lib/perl5/5.6.1/i386-linux 
>> /usr/lib/perl5/5.6.1 /usr/lib/perl5/site_perl/5.6.1/i386-linux 
>> /usr/lib/perl5/site_perl/5.6.1 
/usr/lib/perl5/site_perl/5.6.0/i386-linux 
>> /usr/lib/perl5/site_perl/5.6.0 /usr/lib/perl5/site_perl 
>> /usr/lib/perl5/vendor_perl/5.6.1/i386-linux 
>> /usr/lib/perl5/vendor_perl/5.6.1 /usr/lib/perl5/vendor_perl .) at 
>> /home/gus_home/lib/perl/GUS/GOPredict/Plugin/LoadGoOntology.pm line 
3.
>> BEGIN failed--compilation aborted at 
>> /home/gus_home/lib/perl/GUS/GOPredict/Plugin/LoadGoOntology.pm line 
3.
>> Compilation failed in require at (eval 1) line 1.
>> 
>> 
>> --------------------------- STACK TRACE -------------------------
>>         
>>
>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x80fbb0c)',
>
>> 'Can\'t locate CBIL/Bio/GeneOntologyParser/Parser.pm in @INC 
(@IN...') 
>> called at /home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm 
line 
>> 248
>>         
>>
>GUS::PluginMgr::GusApplication::newFromPluginName('GUS::PluginMgr::GusApplication=HASH(0x80fbb0c)', 

>> 'GUS::GOPredict::Plugin::LoadGoOntology') called at 
>> /home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 361
>>         
>>
>GUS::PluginMgr::GusApplication::doMajorMode_Run('GUS::PluginMgr::GusApplication=HASH(0x80fbb0c)', 

>> 'GUS::GOPredict::Plugin::LoadGoOntology') called at 
>> /home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 283
>>         
>>
>GUS::PluginMgr::GusApplication::doMajorMode('GUS::PluginMgr::GusApplication=HASH(0x80fbb0c)', 

>> 'GUS::GOPredict::Plugin::LoadGoOntology') called at 
>> /home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 192
>>         
>>
>GUS::PluginMgr::GusApplication::parseAndRun('GUS::PluginMgr::GusApplication=HASH(0x80fbb0c)', 

>> 'ARRAY(0x8105130)') called at /home/gus_home/bin/ga line 11
>> 
>> Both LoadGoAssoc and LoadGoOntology need 
>> CBIL/Bio/GeneOntologyParser/Parser.pm but I am wondering why would it 

>> fail for one and run for other.
>> 
>> Thanks and hope to hear from you'll,
>> Chetna
>> 
>> 
>> 
>> 
>> -------------------------------------------------------
>> This sf.net email is sponsored by:ThinkGeek
>> Welcome to geek heaven.
>> http://thinkgeek.com/sf
>> _______________________________________________
>> Gusdev-gusdev mailing list
>> Gus...@li...
>> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev
>> 
>
>
---------End of Included Message----------