Re: [Gusdev-gusdev] LoadGoOntology

[Dave B. <db...@pc...>]

Hi Chetna,

I'm not sure why it's failing on your particular run, but I think the 
first thing to try is downloading a new release of the CBIL project.  The 
GeneOntologyParser has undergone some minor changes recently so it 
definitely couldn't hurt.

Before you do that, we should definitely create a new release.  I will 
talk to Steve about it and let you know when it is safe to proceed.

Thanks,
Dave


On Thu, 17 Apr 2003, Chetna D. Warade wrote:

> Hi,
> 
> I am trying to:
> ga GUS::GOPredict::Plugin::LoadGoOntology --usage and I am getting @INC 
> error whereas when I run:
> ga GUS::GOPredict::Plugin::LoadGoAssoc --usage <--- runs fine!
> 
> Following is the error:
> 
> [chetna@mango Plugin]$ ga GUS::GOPredict::Plugin::LoadGoOntology 
> --usage
> Reading properties from /home/gus_home/config/GUS-PluginMgr.prop
> 
> ERROR: Can't locate CBIL/Bio/GeneOntologyParser/Parser.pm in @INC (@INC 
> contains: /home/gus_home/lib/perl /usr/lib/perl5/5.6.1/i386-linux 
> /usr/lib/perl5/5.6.1 /usr/lib/perl5/site_perl/5.6.1/i386-linux 
> /usr/lib/perl5/site_perl/5.6.1 /usr/lib/perl5/site_perl/5.6.0/i386-linux 
> /usr/lib/perl5/site_perl/5.6.0 /usr/lib/perl5/site_perl 
> /usr/lib/perl5/vendor_perl/5.6.1/i386-linux 
> /usr/lib/perl5/vendor_perl/5.6.1 /usr/lib/perl5/vendor_perl .) at 
> /home/gus_home/lib/perl/GUS/GOPredict/Plugin/LoadGoOntology.pm line 3.
> BEGIN failed--compilation aborted at 
> /home/gus_home/lib/perl/GUS/GOPredict/Plugin/LoadGoOntology.pm line 3.
> Compilation failed in require at (eval 1) line 1.
> 
> 
> --------------------------- STACK TRACE -------------------------
>         
> GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x80fbb0c)', 
> 'Can\'t locate CBIL/Bio/GeneOntologyParser/Parser.pm in @INC (@IN...') 
> called at /home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 
> 248
>         
> GUS::PluginMgr::GusApplication::newFromPluginName('GUS::PluginMgr::GusApplication=HASH(0x80fbb0c)', 
> 'GUS::GOPredict::Plugin::LoadGoOntology') called at 
> /home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 361
>         
> GUS::PluginMgr::GusApplication::doMajorMode_Run('GUS::PluginMgr::GusApplication=HASH(0x80fbb0c)', 
> 'GUS::GOPredict::Plugin::LoadGoOntology') called at 
> /home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 283
>         
> GUS::PluginMgr::GusApplication::doMajorMode('GUS::PluginMgr::GusApplication=HASH(0x80fbb0c)', 
> 'GUS::GOPredict::Plugin::LoadGoOntology') called at 
> /home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 192
>         
> GUS::PluginMgr::GusApplication::parseAndRun('GUS::PluginMgr::GusApplication=HASH(0x80fbb0c)', 
> 'ARRAY(0x8105130)') called at /home/gus_home/bin/ga line 11
> 
> Both LoadGoAssoc and LoadGoOntology need 
> CBIL/Bio/GeneOntologyParser/Parser.pm but I am wondering why would it 
> fail for one and run for other.
> 
> Thanks and hope to hear from you'll,
> Chetna
> 
> 
> 
> 
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