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Re: [Gusdev-gusdev] Setting up your initial Users, etc
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From: Elisabetta M. <man...@pc...> - 2003-03-14 18:58:33
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In the RADwebform we have a user registration submission: https://www.cbil.upenn.edu/RAD/forms/php/misc/user_registration.php This will send email to Trish Whetzel with all the the necessary information and she can start the process of creating a user account. Elisabetta On Fri, 14 Mar 2003, steve fischer wrote: > yes, i agree. chetna- you need to set up your Users and Projects, etc. > Have you ever done this before? > > Jonathan Crabtree is away until Wed. I don't know if he has set up > scripts to assist in this process. but, we should provide something to > make this painless. > > I personally don't know the details of what is involved. > > Can anybody at PSU sketch what chetna should do? > > thanks > steve > > Dave Barkan wrote: > > >Hi Chetna and all, > > > >I had this problem too at one point. Someone needs to insert Chetna into > >our UserInfo table as a user and give her the appropriate permissions. > > > >Dave > > > >On Fri, 14 Mar 2003, Chetna Warade wrote: > > > > > > > >>Hi Steve, > >> > >>I got the latest tars today morning, but I am getting: > >> > >>[chetna@mango install]$ ga +meta --commit > >>Reading properties from /home/gus_home/config/GUS-PluginMgr.prop > >>Reading properties from /home/chetna/.gus.properties > >> <Core::Algorithm> > >> <name>GA-Plugin</name> > >> <description>GUS application framework for plugins</description> > >> <Core::AlgorithmImplementation> > >> <cvs_revision>1.36</cvs_revision> > >> <cvs_tag> </cvs_tag> > >> <executable>GUS::PluginMgr::GusApplication</executable> > >> <executable_md5>5947e17c4e9fea1d750cb5d9aaeee1db</executable_md5> > >> <description>update for GUS 3.0</description> > >> <Core::AlgorithmInvocation> > >> <start_time>sysdate</start_time> > >> <end_time>sysdate</end_time> > >> <machine_id>0</machine_id> > >> <cpus_used>1</cpus_used> > >> <result>meta</result> > >> </Core::AlgorithmInvocation> > >> </Core::AlgorithmImplementation> > >> </Core::Algorithm> > >>DBD::Oracle::st execute failed: ORA-01400: cannot insert NULL into > >>("CORE"."ALGORITHM"."ROW_USER_ID") (DBD ERROR: OCIStmtExecute) at > >>/home/gus_home/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 138. > >> > >> SQL ERROR!! involving > >> > >> INSERT INTO Core.Algorithm ( description, other_read, user_write, > >>group_write, name, modification_date, user_read, algorithm_id, > >>row_alg_invocation_id, group_read, other_write ) > >> VALUES ( ?, ?, ?, ?, ?, SYSDATE, ?, ?, ?, ?, ? ) > >> Values: GUS application framework for plugins, 1, 1, 1, GA-Plugin, 1, 45, > >>1, 1, 0 at /home/gus_home/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 178 > >> > >>GUS::ObjRelP::DbiDbHandle::death('GUS::ObjRelP::DbiDbHandle=HASH(0x84ee5e8)', > >>'^J SQL ERROR!! involving^J ^J INSERT INTO Core.Algorithm ( desc...') > >>called at /home/gus_home/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 141 > >> > >>GUS::ObjRelP::DbiDbHandle::sqlExec('GUS::ObjRelP::DbiDbHandle=HASH(0x84ee5e8)', > >>'GUS::ObjRelP::DbiDbHandle::st=HASH(0x86b7f10)', 'ARRAY(0x86b7f64)', '^J > >>INSERT INTO Core.Algorithm ( description, other_read, user...') called at > >>/home/gus_home/lib/perl/GUS/ObjRelP/DbiRow.pm line 694 > >> > >>GUS::ObjRelP::DbiRow::quote_and_insert('GUS::Model::Core::Algorithm=HASH(0x84ee42c)', > >>'GUS::Model::Core::Algorithm', 'HASH(0x85f7aa0)') called at > >>/home/gus_home/lib/perl/GUS/ObjRelP/DbiRow.pm line 641 > >> > >>GUS::ObjRelP::DbiRow::insert('GUS::Model::Core::Algorithm=HASH(0x84ee42c)') > >>called at /home/gus_home/lib/perl/GUS/Model/GusRow.pm line 1677 > >> > >>GUS::Model::GusRow::submit('GUS::Model::Core::Algorithm=HASH(0x84ee42c)') > >>called at /home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 339 > >> > >>GUS::PluginMgr::GusApplication::doMajorMode_Meta('GUS::PluginMgr::GusApplication=HASH(0x80fbb0c)', > >>undef) called at /home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm > >>line 283 > >> > >>GUS::PluginMgr::GusApplication::doMajorMode('GUS::PluginMgr::GusApplication=HASH(0x80fbb0c)', > >>undef) called at /home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm > >>line 192 > >> > >>GUS::PluginMgr::GusApplication::parseAndRun('GUS::PluginMgr::GusApplication=HASH(0x80fbb0c)', > >>'ARRAY(0x8105130)') called at /home/gus_home/bin/ga line 11 > >>[chetna@mango install]$ > >> > >>Thanks, > >>Chetna > >> > >> > >> > >>>can you get the install.tar and the gus.tar files again from cvsweb at > >>>sanger. > >>> > >>>we have fixed an important problem that was introduced in the last few > >>>days, and i think that will fix your problem. > >>> > >>>i just tested ga +meta --commit here and it seemed fine. > >>> > >>>steve > >>> > >>>Chetna Warade wrote: > >>> > >>> > >>> > >>>>Hi Steve, > >>>> > >>>>Thanks for the mail. > >>>> > >>>> > >>>> > >>>> > >>>> > >>>>>1) can you send me the lines that you commented, so i can fix the problem. > >>>>> > >>>>> > >>>>> > >>>>> > >>>>$GUS_HOME/lib/perl/GUS/ObjRelP/DbiDatabase.pm > >>>>line # 148 > >>>>line # 469 > >>>>line # 478 > >>>>Basically wherever string BIG (Actually BIGRBS1 in gus 3.0) appears. > >>>> > >>>> > >>>> > >>>> > >>>> > >>>>>2) the problem is that the tarball is excluding empty directories. for > >>>>>now, create the following directories: > >>>>> > >>>>> > >>>>> > >>>>> > >>>>Thanks build is working correct now. But here's what I get: > >>>> > >>>>[chetna@mango chetna]$ ga +meta --commit > >>>>Reading properties from /home/gus_home/config/GUS-PluginMgr.prop > >>>>Reading properties from /home/chetna/.gus.properties > >>>> <Core::Algorithm> > >>>> <name>GA-Plugin</name> > >>>> <description>GUS application framework for plugins</description> > >>>> <Core::AlgorithmImplementation> > >>>> <cvs_revision>1.33</cvs_revision> > >>>> <cvs_tag> </cvs_tag> > >>>> <executable>GUS::PluginMgr::GusApplication</executable> > >>>> <executable_md5>0f9925c1794c069d858378c052a9d747</executable_md5> > >>>> <description>update for GUS 3.0</description> > >>>> <Core::AlgorithmInvocation> > >>>> <start_time>sysdate</start_time> > >>>> <end_time>sysdate</end_time> > >>>> <machine_id>0</machine_id> > >>>> <cpus_used>1</cpus_used> > >>>> <result>meta</result> > >>>> </Core::AlgorithmInvocation> > >>>> </Core::AlgorithmImplementation> > >>>> </Core::Algorithm> > >>>>DBD::Oracle::st execute failed: ORA-01400: cannot insert NULL into > >>>>("CORE"."ALGORITHM"."ROW_USER_ID") (DBD ERROR: OCIStmtExecute) at > >>>>/home/gus_home/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 137. > >>>> > >>>>SQL ERROR!! involving > >>>> > >>>> INSERT INTO Core.Algorithm ( description, other_read, user_write, > >>>>group_write, name, modification_date, user_read, algorithm_id, > >>>>row_alg_invocation_id, group_read, other_write ) > >>>> VALUES ( ?, ?, ?, ?, ?, SYSDATE, ?, ?, ?, ?, ? ) > >>>>Values: GUS application framework for plugins, 1, 1, 1, GA-Plugin, 1, 23, > >>>>1, 1, 0 at /home/gus_home/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 177. > >>>>[chetna@mango chetna]$ > >>>> > >>>>Hope to hear from you > >>>>Chetna > >>>> > >>>> > >>>> > >>>> > >>>> > >>>> > >>>> > >>> > >>> > >> > >>------------------------------------------------------- > >>This SF.net email is sponsored by:Crypto Challenge is now open! > >>Get cracking and register here for some mind boggling fun and > >>the chance of winning an Apple iPod: > >>http://ads.sourceforge.net/cgi-bin/redirect.pl?thaw0031en > >>_______________________________________________ > >>Gusdev-gusdev mailing list > >>Gus...@li... > >>https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev > >> > >> > >> > > > > > > > >------------------------------------------------------- > >This SF.net email is sponsored by:Crypto Challenge is now open! > >Get cracking and register here for some mind boggling fun and > >the chance of winning an Apple iPod: > >http://ads.sourceforge.net/cgi-bin/redirect.pl?thaw0031en > >_______________________________________________ > >Gusdev-gusdev mailing list > >Gus...@li... > >https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev > > > > > > > > > > > > > ------------------------------------------------------- > This SF.net email is sponsored by:Crypto Challenge is now open! > Get cracking and register here for some mind boggling fun and > the chance of winning an Apple iPod: > http://ads.sourceforge.net/cgi-bin/redirect.pl?thaw0031en > _______________________________________________ > Gusdev-gusdev mailing list > Gus...@li... > https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev > -- Elisabetta Manduchi Computational Biology and Informatics Laboratory Center for Bioinformatics University of Pennsylvania 1428 Blockley Hall 423 Guardian Drive Philadelphia, PA 19104-6021 phone: 215-573-4408 fax: 215 573-3111 email: man...@pc... web: http://www.cbil.upenn.edu/~manduchi --- |
