Re: [Gusdev-gusdev] Re: gusdev mailing list subscription

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I've have been having a similar problem.

On Fri, 14 Mar 2003, pjm wrote:

>
> I think I did `cvs update -d`, where -d creates any new directories. CVS won't
> create them by default, assuming you may only have checked out a subset of the
> code;
>
>        Use the -d option to create any directories that exist in the reposi-
>        tory if they're missing from the working directory.  (Normally, update
>        acts only on directories and files that were already enrolled in your
>        working directory.)  This is useful for updating directories that were
>        created in the repository since the initial checkout; but it has an
>        unfortunate side effect.  If you deliberately avoided certain direc-
>        tories in the repository when you created your working directory
>        (either through use of a module name or by listing explicitly the
>        files and directories you wanted on the command line), then updating
>        with -d will create those directories, which may not be what you want.
>
>
>
> steve fischer wrote:
> >
> > chetna-
> >
> > 1) can you send me the lines that you commented, so i can fix the problem.
> >
> > 2) the problem is that the tarball is excluding empty directories.  for
> > now, create the following directories:
> >
> > /home/projects/GUS/Model/src/java/org/gusdb/model/hand_edited/SRes
> > /home/projects/GUS/Model/src/java/org/gusdb/model/hand_edited/Core
> > /home/projects/GUS/Model/src/java/org/gusdb/model/hand_edited/RAD3
> > /home/projects/GUS/Model/src/java/org/gusdb/model/hand_edited/TESS
> >
> > steve
> >
> > Chetna Warade wrote:
> >
> > >Hi Steve,
> > >
> > >1) I downloaded latest tars from cvsweb sanger and tried to "build GUS
> > >install -append". I remember reading about the rollback segments some
> > >weeks back but in my case I need to comment 3 lines from
> > >$GUS_HOME/lib/perl/GUS/ObjRelP/ DbiDatabase.pm file.
> > >
> > >2)  But while building:
> > >.....
> > >     [copy] Copying 2 files to
> > >/home/projects/GUS/Model/src/java/org/gusdb/model/DoTS
> > >
> > >BUILD FAILED
> > >file:/home/projects/GUS/build.xml:123:
> > >/home/projects/GUS/Model/src/java/org/gusdb/model/hand_edited/SRes not
> > >found.
> > >
> > >Because SRes is not there? Any idea I downloaded from cvsweb sanger today
> > >morning.
> > >
> > >Thanks for the help
> > >Chetna
> > >
> > >
> > >
> > >>ok, i see how i confused you.  what i described works for folks that are
> > >>using the cvs repository directly.
> > >>
> > >>in your case, instead, you should just get the new .tar files for GUS
> > >>and install from
> > >>
> > >> http://cvsweb.sanger.ac.uk/cgi-bin/cvsweb.cgi/GUS/GUS.tar.gz?cvsroot=GUS&f=h&tarball=1
> > >>and from
> > >>
> > >> http://cvsweb.sanger.ac.uk/cgi-bin/cvsweb.cgi/install/install.tar.gz?cvsroot=GUS&f=h&tarball=1
> > >>
> > >>hopefully, that will fix your problem.  otherwise, let me know.
> > >>
> > >>steve
> > >>
> > >>Chetna Warade wrote:
> > >>
> > >>
> > >>
> > >>>Hi,
> > >>>
> > >>>Thanks for the mail,
> > >>>
> > >>>1) I am little confused here about the rehash and updateAllProjects
> > >>>command.
> > >>>Where does these two commands/plugins/scripts live. I mean are they
> > >>>located in $GUS_HOME/bin directory..
> > >>>
> > >>>Also currently I haven't added the cvs on the $PROJECT/install and
> > >>>$PROJECT/GUS directories but in other repository to keep track of
> > >>>downloads at my side. So do you recommend putting it in $PROJECT install
> > >>>and GUS directories.
> > >>>
> > >>>2) I am still getting this:
> > >>>
> > >>>[chetna@mango chetna]$ ga +meta --commit
> > >>>Can't locate object method "userError" via package "GUS::Plugin
> > >>>on" (perhaps you forgot to load "GUS::PluginMgr::GusApplication
> > >>>home/lib/perl/GUS/PluginMgr/GusApplication.pm line 44.
> > >>>[chetna@mango chetna]$
> > >>>
> > >>>Hope to hear from you
> > >>>Chetna
> > >>>
> > >>>
> > >>>
> > >>>
> > >>>
> > >>>>$PROJECT_HOME contains the projects:  GUS, install, CBIL, etc.  GUS and
> > >>>>install have CVS/ dirs, but CBIL doesn't because it is from the download
> > >>>>site.
> > >>>>
> > >>>>steve
> > >>>>
> > >>>>Chetna Warade wrote:
> > >>>>
> > >>>>
> > >>>>
> > >>>>
> > >>>>
> > >>>>>Hi,
> > >>>>>
> > >>>>>I tried:
> > >>>>>[chetna@mango chetna]$ ga +meta --commit
> > >>>>>Can't locate object method "userError" via package
> > >>>>>"GUS::PluginMgr::GusApplication" (perhaps you forgot to load
> > >>>>>"GUS::PluginMgr::GusApplication"?) at
> > >>>>>/home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 44.
> > >>>>>[chetna@mango chetna]$
> > >>>>>
> > >>>>>Also to run cvs update do you expect a cvs system on the $PROJECT_HOME and
> > >>>>>$GUS_HOME directories.
> > >>>>>
> > >>>>>I will send a test mail on the gusdev-gusdev-list,
> > >>>>>
> > >>>>>Thanks,
> > >>>>>Chetna
> > >>>>>
> > >>>>>
> > >>>>>
> > >>>>>
> > >>>>>
> > >>>>>
> > >>>>>
> > >>>>>>i don't think there are any resitrictions on who can write to the
> > >>>>>>mailing list.  what address are you trying, and what happens?
> > >>>>>>
> > >>>>>>as far as ga is concerned, first, the command is ga +meta --commit (not
> > >>>>>>--create).
> > >>>>>>
> > >>>>>>also, i think you should just make sure you have the latest.
> > >>>>>>
> > >>>>>>do this:
> > >>>>>>1. get the latest CBIL download from:
> > >>>>>>http://www.cbil.upenn.edu/downloads/CBIL/releases/CBIL_v1-2-0.tar.gz
> > >>>>>>2. cd $PROJECT_HOME/install
> > >>>>>>     cvs update
> > >>>>>>     rehash
> > >>>>>>     updateAllProjects
> > >>>>>>
> > >>>>>>steve
> > >>>>>>
> > >>>>>>Chetna Warade wrote:
> > >>>>>>
> > >>>>>>
> > >>>>>>
> > >>>>>>
> > >>>>>>
> > >>>>>>
> > >>>>>>
> > >>>>>>>Hi,
> > >>>>>>>
> > >>>>>>>I am trying to mail to the mailing list and I am unable to do so. I am
> > >>>>>>>wondering if I have enough permissions on the mail list.
> > >>>>>>>
> > >>>>>>>I am tyring to run:
> > >>>>>>>
> > >>>>>>>[chetna@mango chetna]$ ga +meta --create
> > >>>>>>>Can't locate object method "userError" via package
> > >>>>>>>"GUS::PluginMgr::GusApplication" (perhaps you forgot to load
> > >>>>>>>"GUS::PluginMgr::GusApplication"?) at
> > >>>>>>>/home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 44.
> > >>>>>>>[chetna@mango chetna]$
> > >>>>>>>
> > >>>>>>>It would be great if you could help me debug this.
> > >>>>>>>Thanks
> > >>>>>>>Chetna
> > >>>>>>>
> > >>>>>>>
> > >>>>>>>
> > >>>>>>>
> > >>>>>>>
> > >>>>>>>
> > >>>>>>>
> > >>>>>>>
> > >>>>>>>
> > >>>>>>>
> > >>>>>>>
> > >>>>>>
> > >>>>>>
> > >>>>>>
> > >>>>>>
> > >>>>>>
> > >>>>>>
> > >>>>>
> > >>>>>
> > >>>>>
> > >>>>>
> > >>>>
> > >>>>
> > >>>>
> > >>>>
> > >>>
> > >>>
> > >>>
> > >>>
> > >>
> > >>
> > >
> > >
> > >
> > >
> >
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-- 
Elisabetta Manduchi

Computational Biology and Informatics Laboratory
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